CI01000001_06458769_06470107 (ARHGEF3L)


Basic Information

Item Value
gene id CI01000001_06458769_06470107
gene name ARHGEF3L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6458769 ~ 6470495 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06458769_06470107.mRNA
AAATGGGTCAGAAGATTTGGTTTAACTTCCGTCCTCTTCAATGATGGCGTTATGTATGACTGGCGTAATTACACAGAGAACCAAGGATCTGTCAGAGACGTTAAAGAGTGGTGGTTTGGCTTCGTTCTGCCTGACAACAGGAAGTACACTTTTTTTTCTTGCACAGGATGTGGTTTCAGACATGCAAGTATTTATGGTCTGATTTTTAACGTAATACTCTTTCGTTTACCGGCGTTTCTATTCATAAGCACATCAGAAGATGCTATGAGAGAGGAAAATATGGAGCCTGAAGAGACGGAGGTTGATTCACCACCTTCCTGGTCTCCTGTATCTAGAGACAGACTCCTCACATGTGCCAACTTGTCAGATTACGCAGGGAAGAAAAGAAAACAAGACCCAAGTAGTGATGCTGAGAATTCAGCCCGAATCTTGGAGGACTGTGAAGACGATGACTTTCCCATCAGTGACCACATACAAGATTCTGAGGGTCCATGTAACAAAAGAGTCAAACCAGTAGACAAAAGTGCTTCAGTCACTGGTATCATAACACCGGTGAAGACCCCTGCACTGAAACGCTTGGGCCAATCCATACAGCGTTCAATCAGTTTTCGGACAGAGGCCCGGCCATTGCCCCCAATGCCAATAAGAACACGTCAGAAGGCCTCTTCATTTCCACGGCGGCGGAGCAGCCAGCTATGGAGTGATACAGTGGACAGTCTGAGCCACGAACTCAGTACCAAAGAGATCAAGCGACAAGAGGTAATCTATGAGTTAACTCAGGGAGAGAAACAGCTCATTGAGGATCTAAGTCTAGTGAAAAAGGTGTACTATGAACCGATGCTGAAATTAGACATCATGACAGAAAGTGAGCTGGGACAGATATTTGGAACCCTTGATTCTTTAATACCCCTTCATGAAGATCTTTTAGCTCGTCTTGAAGGTCTTCGTGGAGCTGAGAAGACTGTGCAAGAGGTCGGCCCAACCATGATGGATTGGTTTCCCTGTCTGGAGGCGTACATCACATACTGCTGTAACCAGGTTGGGGCAAAAGCTCTGCTTGATCAAAAGAAACAGGACCGGCGGGTTGAGCATTTCTTGCGGCTGTGCCAGGAGTCATCCTTCAGCAGAAAGCTGGACCTGTGGAACTTTCTGGACTTGCCCCGCAGCAGACTGGTGAAATATCCTCTGCTGTTAAAGGAGATCCAGAAGAGCACTCCACCTGACCATCCGGATGAGGAAGCGTTGCCTCAGGCTATGGATCTAATCCAAAGGATTATAACAGAAGTCAATCTTAAAACTGGGGAGGCTGAGTGTCAGTTTTACAGACGGGGTCTGTGCTACTCAGAAGACAGCCAGAGGGTTTCAGAAATACAGGCCTCTCGTTTTTTGTACTGTCACGGTGAATTGAAGAGTACTAAAGGACAGAAGCTGCATGTGTTCCTCTTTGAGCTGGTTTTGGTTTTGACTCGACCAGTGGCACAGGACAGGGAAGGACCGGTCCAGTTCCAGGTGTATCGTCAGCCCCTCCCAGCTGCTCACCTCCATCTGGAGGACCTACCCGATGGAGAGCCAAGCAGTTCTGGAGCCTTTCGTGGGGCCTTTACGGGCAATGATAAAATGAAGAATTGTTTCCGTGTGAGCACGACAGGCCGCTCCAAGTCTCAGTCCCACAGCCTGCAGGCTAATGACTCCTTCAATAAGCAGCAATGGATTTCTTGTCTGCGCCAAGCAATGGTCCAGTCACGGGACAGACAGGCTCAATCCAGCCACTGCAAACCCTCCGAGCGTTTAAGCCCTGACCCGGCACTCTATAACAACATCGCTGAACTGAACCTTAACTCTGATGTGGAGATGCCAGACACATAGGCCAGGGCTATCGGTGCTCTCCAGGTCAATGGTTCATTCACAATCACAGGATTTCACTTGTAATGTGATTGTGACCATGACAGCCAACTTTCACAGGACAAATTAAATCACGCACTTGCGGTTTCACGCCCTGTCTTGGAAACTGTGAGAATAATGTCATGTAGCTATATTTGTATACTTCATATGTGGATGTTTGTTGGTGTCAGATGTCTAATGGAGGAAATATTTTGTATTAGATGTTTGCTTTTTGCTTAACCAGTTTATTTTTTTACATTGAGAATTTTGTGTGATATTTGTTGAATATGGGACATGTGAACCATCTCTCAGTTCCTCGTTCCTTTAAATTGTGTTTAAATGACATATCATTCCTCTCCATCTGATCTGGTCA

Function

symbol description
arhgef3l Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in positive regulation of Rho protein signal transduction. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm.

GO:      GO:0005089, GO:0035556, GO:0005085, GO:0035023

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06458769_06470107.mRNA True 2254 mRNA 0.46 14 6458769 6470495

Neighbor

gene id symbol gene type direction distance location
CI01000001_06442969_06455699 UBA1 coding upstream 2910 6442969 ~ 6455859 (+)
CI01000001_06420606_06430104 CAMKVL coding upstream 28636 6420606 ~ 6430133 (+)
CI01000001_06363645_06370085 ADNP coding upstream 88668 6363645 ~ 6370101 (+)
CI01000001_06325915_06358454 SLC35C2, COL20A1 coding upstream 100095 6325074 ~ 6358674 (+)
CI01000001_06309664_06321614 SLC35C2 coding upstream 136681 6309361 ~ 6322088 (+)
CI01000001_06474891_06479887 USP21 coding downstream 4396 6474891 ~ 6480025 (+)
CI01000001_06484769_06502296 CCDC30 coding downstream 14274 6484769 ~ 6504149 (+)
CI01000001_06519105_06525958 NA coding downstream 48138 6518633 ~ 6526120 (+)
CI01000001_06531852_06539325 TTC34 coding downstream 61357 6531852 ~ 6539493 (+)
CI01000001_06541966_06547403 NA coding downstream 71471 6541966 ~ 6547745 (+)
G16247 NA non-coding upstream 25441 6433084 ~ 6433328 (+)
G16212 NA non-coding upstream 176217 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 231624 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 249989 6208552 ~ 6208780 (+)
G16188 NA non-coding upstream 250415 6207632 ~ 6208354 (+)
G16257 NA non-coding downstream 44626 6515121 ~ 6515398 (+)
G16284 NA non-coding downstream 201687 6672182 ~ 6673511 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding downstream 253314 6717159 ~ 6747744 (+)
G16317 NA non-coding downstream 329673 6800168 ~ 6800381 (+)
CI01000001_06893068_06917387 IFFO2A non-coding downstream 445292 6893068 ~ 6917660 (+)
G15995 NA other upstream 743818 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1168813 5279837 ~ 5287698 (+)
G15794 NA other upstream 1394065 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2837318 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4787765 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1062077 7531541 ~ 7540586 (+)
G17234 NA other downstream 1561629 8032124 ~ 8032483 (+)
G17353 NA other downstream 2745527 9216022 ~ 9228859 (+)
G17354 NA other downstream 2763968 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2947833 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021637 arhgef3l coding NC_007134.7 CM002907.2 20669149 ~ 20684086 (+)