RNA id: TU18103


Basic Information

Item Value
RNA id TU18103
length 229
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G16189
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6208552 ~ 6208780 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGCAAAAAAAATCAAAGTAACGACTTTTTAACAATATCTATTTCAAAACACTGCTTCATGAAGCTTCTGAGCTTTACGAATCAGTCGAATCGAATCAGTGATTCGGATCGCGTATCAAACCGCCAAACTGCTGAAATCACGTGACTTTGGCGCAACGAACCACTGATTCGATTCGTAAAGCTCCGAAGCTTCATGAAGCAGTGTTTTGAAATATTGTTAAAAAATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18102 lncRNA upstream 198 6207632 ~ 6208354 (+) True G16188
TU18086 lncRNA upstream 31420 6176623 ~ 6177132 (+) True G16172
TU18085 lncRNA upstream 37987 6166692 ~ 6170565 (+) True G16171
TU18075 lncRNA upstream 70332 6137962 ~ 6138220 (+) True G16163
TU17943 lncRNA upstream 82087 6105709 ~ 6126465 (+) True G16040
TU18107 lncRNA downstream 18079 6226859 ~ 6227145 (+) True G16193
TU18127 lncRNA downstream 73559 6282339 ~ 6282552 (+) True G16212
TU18164 lncRNA downstream 224304 6433084 ~ 6433328 (+) True G16247
TU18175 lncRNA downstream 306341 6515121 ~ 6515398 (+) True G16257
TU18220 lncRNA downstream 463402 6672182 ~ 6673511 (+) True G16284
CI01000001_06121398_06124748.mRNA mRNA upstream 83600 6121398 ~ 6124952 (+) True CI01000001_06121398_06124748
CI01000001_06040916_06041645.mRNA mRNA upstream 165942 6040916 ~ 6042610 (+) True CI01000001_06040916_06041645
CI01000001_05960289_05963221.mRNA mRNA upstream 245209 5958349 ~ 5963343 (+) True CI01000001_05960289_05963221
CI01000001_05942155_05943721.mRNA mRNA upstream 264533 5942155 ~ 5944019 (+) True CI01000001_05942155_05943721
CI01000001_05933655_05938581.mRNA mRNA upstream 269311 5933655 ~ 5939241 (+) True CI01000001_05933655_05938581
CI01000001_06297032_06300530.mRNA mRNA downstream 88252 6297032 ~ 6300660 (+) True CI01000001_06297032_06300530
CI01000001_06303405_06305351.mRNA mRNA downstream 94625 6303405 ~ 6305351 (+) True CI01000001_06303405_06305351
CI01000001_06309664_06321614.mRNA mRNA downstream 100581 6309361 ~ 6322088 (+) True CI01000001_06309664_06321614
CI01000001_06325915_06358454.mRNA mRNA downstream 116294 6325074 ~ 6358674 (+) True CI01000001_06325915_06358454
CI01000001_06363645_06370085.mRNA mRNA downstream 154865 6363645 ~ 6370101 (+) True CI01000001_06363645_06370085
TU17891 other upstream 493601 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 918596 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 1143848 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 1144623 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2587101 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 1323792 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1323860 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1323984 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 1823344 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 3007242 9216022 ~ 9228859 (+) True G17353

Expression Profile