Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU18977 |
| length | 876 |
| lncRNA type | read_through |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G16937 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 6936142 ~ 6946151 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU18962 | lncRNA | upstream | 17880 | 6917686 ~ 6918262 (+) | True | G16922 |
| TU18253 | lncRNA | upstream | 135761 | 6800168 ~ 6800381 (+) | True | G16317 |
| TU18214 | lncRNA | upstream | 203217 | 6723809 ~ 6732925 (+) | True | CI01000001_06718133_06747744 |
| TU18220 | lncRNA | upstream | 262631 | 6672182 ~ 6673511 (+) | True | G16284 |
| TU18175 | lncRNA | upstream | 420744 | 6515121 ~ 6515398 (+) | True | G16257 |
| TU19054 | lncRNA | downstream | 145602 | 7091753 ~ 7123993 (+) | True | G16977 |
| TU19101 | lncRNA | downstream | 205943 | 7152094 ~ 7152425 (+) | True | G17019 |
| TU19046 | lncRNA | downstream | 333092 | 7279243 ~ 7284904 (+) | True | G16970 |
| TU19141 | lncRNA | downstream | 370513 | 7316664 ~ 7319030 (+) | True | G17057 |
| TU19145 | lncRNA | downstream | 377135 | 7323286 ~ 7323615 (+) | True | G17061 |
| CI01000001_06921000_06929478.mRNA | mRNA | upstream | 5783 | 6921000 ~ 6930359 (+) | True | CI01000001_06921000_06929478 |
| CI01000001_06893068_06917387.mRNA | mRNA | upstream | 18734 | 6893068 ~ 6917408 (+) | False | CI01000001_06893068_06917387 |
| CI01000001_06884020_06889266.mRNA | mRNA | upstream | 46150 | 6884020 ~ 6889992 (+) | True | CI01000001_06884020_06889266 |
| CI01000001_06825263_06835397.mRNA | mRNA | upstream | 99679 | 6825263 ~ 6836463 (+) | True | CI01000001_06825263_06835397 |
| CI01000001_06718133_06747744.mRNA | mRNA | upstream | 188398 | 6717159 ~ 6747744 (+) | False | CI01000001_06718133_06747744 |
| CI01000001_06948672_06949034.mRNA | mRNA | downstream | 2435 | 6948586 ~ 6949034 (+) | True | CI01000001_06948672_06949034 |
| CI01000001_06956478_06959048.mRNA | mRNA | downstream | 9348 | 6955499 ~ 6959620 (+) | True | CI01000001_06956478_06959048 |
| CI01000001_06960133_06963752.mRNA | mRNA | downstream | 13982 | 6960133 ~ 6964430 (+) | True | CI01000001_06960133_06963752 |
| CI01000001_06981183_06981774.mRNA | mRNA | downstream | 35032 | 6981183 ~ 6981804 (+) | True | CI01000001_06981183_06981774 |
| CI01000001_06996957_07040074.mRNA | mRNA | downstream | 50806 | 6996957 ~ 7040081 (+) | True | CI01000001_06996957_07040074 |
| TU17891 | other | upstream | 1221191 | 5711885 ~ 5714951 (+) | True | G15995 |
| TU17699 | other | upstream | 1646186 | 5289881 ~ 5289956 (+) | True | G15838 |
| TU17650 | other | upstream | 1871438 | 5061218 ~ 5064704 (+) | False | G15794 |
| TU17651 | other | upstream | 1872213 | 5061218 ~ 5063929 (+) | True | G15794 |
| TU16602 | other | upstream | 3314691 | 3616248 ~ 3616411 (+) | True | G14846 |
| TU19033 | other | downstream | 586421 | 7532572 ~ 7540586 (+) | False | CI01000001_07531945_07539781 |
| TU19037 | other | downstream | 586489 | 7532640 ~ 7540586 (+) | False | CI01000001_07531945_07539781 |
| TU19034 | other | downstream | 586613 | 7532764 ~ 7540460 (+) | True | CI01000001_07531945_07539781 |
| TU19348 | other | downstream | 1085973 | 8032124 ~ 8032483 (+) | True | G17234 |
| TU19478 | other | downstream | 2269871 | 9216022 ~ 9228859 (+) | True | G17353 |
