RNA id: TU19141


Basic Information

Item Value
RNA id TU19141
length 2128
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id G17057
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7316664 ~ 7319030 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAAATTTGCATTTCTAGAAAACAGGTTGAAATAGCCAGTTTTGAAGTTTGTGCAATCCCTAAGATCTCTCCAGACAGTAGAAAGAGATTCCAGTTGGCCAAAGGGATGTGAAAAAACATCAGAAGTGCTGTCATAAGTAAATACTCTGTAATCATCAAGCATGCCATATGATGAGTATTTTGGCAAATGTCCATGTCTGGGAGCAAATGTCACATATATAATCAAACTGTGATGCCCTAGTATTCCGCTTGCAAAGTCATCAAGGAGGACACCAACAAGAACTGTAATATTCAAGAAAAAAAGTAAAGAATATGTAGATATATTCATTCTACTCATACACCTACAGTACCTCTTGCAAATGGATATCCCATCAGCACCTTAGTTCTTACTACCAATTAGCTGTATTGAAATGTAATAGATTAATATAGTACTGTTGCAGCAGTCATCATCTGATTGTTTTGTAGCTACATTGTAAATTACAGTTTTTTTCTTTGTTTTCTACTGCCTAATCCTATGTACACACAGTTCATTTATTTAAAGGAGTGACATTCACATTGTATCATCCAGGTAAAAGATCATAAGCAGAGTCAAAATGTCACAGGGAGTATGTTTTCGGTACAACACTTGCAAAGCCTACCGTGGTTTTCTTCTATGTTCCGCATCCGCAAATCGGTCTGAATGAATTAATAATGGTGTTAATGGGAAGGCTGGTTAAAAAGTAAGTAGTCTAAACAACTCACCCACTTGAAATCACCCACCACTTTATGTTATTCAAACTGACTTGATAAAGTGATCTAAGTTTTTTAGTAAGTAATCAAATTAACGGTAGTCTTCATCTGTCTGTGATCATAATGACGAACAGCTAGCTGAACATTAAACAAATAAAATAGCCTATAGGCCTACAGGATGAAATATGAAATGTATTACTGCTTTCTTATAGCCTATTTTGGAATGGCTTAAATGTAAAAATAATGAGAAATATACTTTATCTTAATTAGCGATAGAACAATAACAATGGTAATGTAAAAATACAAAATATAACTGTTTTGGATGTTGTTGTTGTTTTCTTGATGTAGTGTAAGTAATGTTTATTTAACCTGAAAAAAATCCTCATTCAGAAAAGCACTGCACTTCACTGGTTGCCTTTAGCTATTGCATAAAATACAGAGAGACAGAACAATAGGTTCCTGTCAAAATTTTACATTTCAAATAGTCTTAATTCCTAGAAGTCATGTGATTAAAGTTCACAGACAGCTGTTGAAAAGCCTGTTATAAGGAACGGTGCTCAGACATATGCATTTCTTAGGGCACTCAATTTGTTCCTCATTAAAAAGGTTTTACAATTAAATAAGTTAACATAATTCAATATAGTTCATTATCAGACCTGTAGGAGTTTTCAGTTGCCATTATAATGACTTTTAGTCCAGACCATGCACTGTTTCATTTGTAGAATTCCAGTTTTCACACTGCAGAACATCTCATAAACCTAATGATATCTTTTCATGTTATAGGCTATAGGCCTACTAATAATTAATGCTAAAACACAACAAAACACTTTAGCAAGTATTTTACTTTAAGTGGATTTACAAAAAGGCTATATATTTCATTATTTAGATAAGTTGCCAAACCTGTATTGCTCGTTTTGACTAGCCCAGTGCTGTACATTTACTTTTGTTTTCAATGCCCAAGTTAACACAAACTGCATTCTTACCAGAAAAATCTTGTAAATTTTTGTGTGAGACAGATGAGACATCCCCACACTGATAATCAATTTGAGGTAGATGTGCTGTCTGTGATTCTCTTAAGTTTGTCGAAGCAGCTTCCAACAGATAACCACCATATACATACAGTATATACTGTTACACCCAATTCCTCAGATGTTTCTATACAATGTGCGATTAGCAGCCAGCGTCATTTCACATTGTCAACCTCTGCTGAAATCTTATTGGTCAAACACTCTAAGTATTTGGGTAGTCGATGTGACATCATGGTTTTACTGTCTATCATGAAAGTATAAATAAAATGTATTGAATTTCATGATACAGATTAATGTGTGTGCGTGTGTATGTTAAATAATTATAATTTAATGACAATTTAATGTAAGAAACTCAACTTATTATTTTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19046 lncRNA upstream 31760 7279243 ~ 7284904 (+) True G16970
TU19101 lncRNA upstream 164239 7152094 ~ 7152425 (+) True G17019
TU19054 lncRNA upstream 192671 7091753 ~ 7123993 (+) True G16977
TU18977 lncRNA upstream 370513 6936142 ~ 6946151 (+) True G16937
TU18962 lncRNA upstream 398402 6917686 ~ 6918262 (+) True G16922
TU19145 lncRNA downstream 4256 7323286 ~ 7323615 (+) True G17061
TU19055 lncRNA downstream 110160 7429190 ~ 7430067 (+) True G16978
TU19062 lncRNA downstream 114653 7507979 ~ 7507990 (+) True G16985
TU19025 lncRNA downstream 142098 7461128 ~ 7492111 (+) True G16961
TU19074 lncRNA downstream 186915 7505945 ~ 7506881 (+) True G16997
CI01000001_07231558_07266828.mRNA mRNA upstream 49762 7231558 ~ 7266902 (+) True CI01000001_07231558_07266828
CI01000001_07208833_07215412.mRNA mRNA upstream 101157 7208283 ~ 7215507 (+) True CI01000001_07208833_07215412
CI01000001_07056922_07065716.mRNA mRNA upstream 250121 7056922 ~ 7066543 (+) True CI01000001_07056922_07065716
CI01000001_07045345_07052918.mRNA mRNA upstream 263694 7045345 ~ 7052970 (+) True CI01000001_07045345_07052918
CI01000001_06996957_07040074.mRNA mRNA upstream 276583 6996957 ~ 7040081 (+) True CI01000001_06996957_07040074
CI01000001_07330166_07335508.mRNA mRNA downstream 11136 7330166 ~ 7336036 (+) True CI01000001_07330166_07335508
CI01000001_07405859_07406484.mRNA mRNA downstream 86114 7405144 ~ 7406689 (+) True CI01000001_07405859_07406484
CI01000001_07421548_07447343.mRNA mRNA downstream 102518 7421548 ~ 7447505 (+) False CI01000001_07421548_07447343
CI01000001_07527533_07530601.mRNA mRNA downstream 207999 7527029 ~ 7531071 (+) True CI01000001_07527533_07530601
CI01000001_07531945_07539781.mRNA mRNA downstream 212511 7531541 ~ 7540565 (+) False CI01000001_07531945_07539781
TU17891 other upstream 1601713 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 2026708 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 2251960 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 2252735 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 3695213 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 213542 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 213610 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 213734 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 713094 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 1896992 9216022 ~ 9228859 (+) True G17353

Expression Profile