RNA id: CI01000001_06583486_06641365.mRNA


Basic Information

Item Value
RNA id CI01000001_06583486_06641365.mRNA
length 1518
RNA type mRNA
GC content 0.56
exon number 9
gene id CI01000001_06583486_06641365
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6583486 ~ 6641365 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCATCTTTACCGGGAACAGTACCGCGAATGATGCGACCGGCTCCAGGACAGAACTATCCCCGCACTGGATTCCCCTTGGAAGTTTCAACTCCTCTGGGTCAAGGTCGAGTGAATCAGCTTGGCGGAGTATTCATCAATGGCAGGCCTTTGCCAAATCATATCCGTCACAAAATTGTTGAAATGGCTCACCACGGCATCCGTCCCTGCGTGATCTCCCGACAACTTCGCGTTTCCCACGGTTGTGTGTCCAAAATCCTCTGCCGGTATCAAGAAACTGGCTCAATCCGTCCGGGAGCAATAGGAGGAAGTAAACCCAGACAGGTGGCAACACCTGACGTGGAAAAACGAATCGAAGAATACAAGCGCGAAAATCCCGGCATGTTCAGTTGGGAGATTCGGGACAAACTGTTGAAGGACGGTGTGTGTGACAGAAGTACAGTTCCCTCAGGTGAGGCCGCATCTGTAAGTTCTATCAGCCGGGTTCTACGTGCGCGTTTCGGCAAAAAAGACGATGAGGACGATTGCGACAAAAAAGATGACAGTGGGGAGAAAAAAACCAAGCACAGCATTGACGGCATACTGGGAGACAAAGGTCGAATGGACGAAGGCTCGGACGTCGAGTCTGAACCGGACCTGCCCCTGAAGAGGAAGCAGAGGCGCAGTCGGACCACTTTCACAGCCGAGCAGCTGGAAGAGCTGGAGAAGGCCTTCGAAAGGACACACTACCCAGACATCTACACCAGAGAGGAGCTAGCCCAGAGAACCAAGCTTACCGAGGCCAGAGTACAGGTTTGGTTCAGCAATCGACGAGCCAGGTGGCGTAAACAAGCTGGAGCTAATCAACTGGCGGCATTTAACCACCTGTTACCTGGAGGATTCCCACCCACAGGCATGCCCACTCTACCAACATACCAGCTTCCTGAGTCCACCTATCCTTCAACAACATTACCACAAGATGTCAGTGGCACAGTGCATCGGCCCCAGCCCTTGCCCCCCTCCACCATGCATCAGGGCGGGCTCTCGAGCGACAGCAGCTCCGCCTATGGCCTCTCGTCCAACCGTCACGGTTTCTCCAGCTACACCGACACCTTCATGAGCCAGTCAGCGTCCAGCAATCACATGAATCCTGTGAGCAATGGACTATCTCCACAGGTGATGAGCATCCTCAGCAACCCCAGTGCCGTGGCCCCTCAGCCCCAGCATGAGTTCTCCATCTCCCCTCTGCACAGCAGCCTGGAGGCCTCCAACCCCATCTCAGCCAGCTGCAGCCAGCGCTCCGAGCCTATCAAGACCGCCGACAGCCTCGCTTCCACCCAGTCCTACTGCCCTCCTACGTACAGCACCACCAGCTACAGCGTGGACCCCGTCACTGCGGGCTACCAATACAGTCAGTACGGCCAGACTGCGGTGGATTACCTGGCTAAGAATGTGAGCTTGTCCACGCAGAGAAGGATGAAGCTCGGAGAGCACTCGGCTGTGCTCGGACTGCTACAGGTGGAGACGGGACAGGCGTAT

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09381 PAX3_7; paired box protein 3/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18175 lncRNA upstream 68088 6515121 ~ 6515398 (+) True G16257
TU18164 lncRNA upstream 150158 6433084 ~ 6433328 (+) True G16247
TU18127 lncRNA upstream 300934 6282339 ~ 6282552 (+) True G16212
TU18107 lncRNA upstream 356341 6226859 ~ 6227145 (+) True G16193
TU18103 lncRNA upstream 374706 6208552 ~ 6208780 (+) True G16189
TU18220 lncRNA downstream 30817 6672182 ~ 6673511 (+) True G16284
TU18214 lncRNA downstream 82444 6723809 ~ 6732925 (+) True CI01000001_06718133_06747744
TU18253 lncRNA downstream 158803 6800168 ~ 6800381 (+) True G16317
TU18962 lncRNA downstream 274422 6917686 ~ 6918262 (+) True G16922
TU18977 lncRNA downstream 294777 6936142 ~ 6946151 (+) True G16937
CI01000001_06564886_06568295.mRNA mRNA upstream 15191 6564886 ~ 6568295 (+) True CI01000001_06564886_06568295
CI01000001_06541966_06547403.mRNA mRNA upstream 35741 6541966 ~ 6547745 (+) True CI01000001_06541966_06547403
CI01000001_06531852_06539325.mRNA mRNA upstream 43993 6531852 ~ 6539493 (+) True CI01000001_06531852_06539325
CI01000001_06519105_06525958.mRNA mRNA upstream 57366 6518633 ~ 6526120 (+) True CI01000001_06519105_06525958
CI01000001_06484769_06502296.mRNA mRNA upstream 79337 6484769 ~ 6504149 (+) True CI01000001_06484769_06502296
CI01000001_06700913_06706131.mRNA mRNA downstream 59446 6700811 ~ 6706423 (+) True CI01000001_06700913_06706131
CI01000001_06718133_06747744.mRNA mRNA downstream 75794 6717159 ~ 6747744 (+) False CI01000001_06718133_06747744
CI01000001_06825263_06835397.mRNA mRNA downstream 183898 6825263 ~ 6836463 (+) True CI01000001_06825263_06835397
CI01000001_06884020_06889266.mRNA mRNA downstream 242655 6884020 ~ 6889992 (+) True CI01000001_06884020_06889266
CI01000001_06893068_06917387.mRNA mRNA downstream 251703 6893068 ~ 6917408 (+) False CI01000001_06893068_06917387
TU17891 other upstream 868535 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 1293530 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 1518782 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 1519557 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2962035 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 891207 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 891275 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 891399 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 1390759 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 2574657 9216022 ~ 9228859 (+) True G17353

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042956 False 2187 mRNA 0.49 9 NC_007134.7 20863145 ~ 20936845 (+)
bowfin (Amia calva) AMCG00002123 True 459 mRNA 0.63 3 CM030136.1 4053794 ~ 4057620 (+)