G186578 (rhob,LOC104947257)


Basic Information

Item Value
gene id G186578
gene name rhob,LOC104947257
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22716970 ~ 22719893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU252735
attttttttattggctTTCCCAAAACAGTACCGCTTGTTCCCTTACATTCTGGATTGTTTTTCCTCACAACAAATTTCATTGTTCCATTCAAACGAAATGATGTCATTGCAACAATGTGGTCATAATTTGACACACTCTTACAAatatgtttggcacattttcagcatttttcttctccaaaattccattgttttatttttcaaaacaagaaaattaaagaaaaacatgctctgcttTGTCTGATCAGTGAATAATAACCTAACAACATTGGAAATGAGGCACATGAGGGGGGCCAGTGTGGGAAAATTAACCAGTCCAGCACAATGCATTCCTGTCCTGTAAGTCAGCAAAAAGCCCAGCAACAGAAGACAGGGAGGAATGTGACTTTTACACCATTGTGACTCTGGCTGGATTTATAAAAGATACTTTTTTAAAACTCAGATTCATCTTCACTATGGTTACTACTGTTTACTGAACCACAGAAAAAATGACATGTTTAAAGCAAAGATAATAAAGTGCATAGTAAATCCACCAGGGTTTTACCCTGAATTTCCAGTGTTGCAACACCGTCTGTAATTGATAATCATAGCTGTCATTTTAACAACAAGCGCTCACATCATCTGTAAGGGAAAAGTAACACAACATTTCTAGTCAGATCAGACGTAGAAGTAtgaaaaataaactcaaatacaTTGATTTCTGTTGCTAACTTCAAAGCTCCAAATACATGTGAGATACATGCAGTCATAAAGGAAGACATTAAGATGTTTTTGTTCCTAATTCAGTTGTAGTGCTGTAAACAAACTTTAACATCTTCAGAAAAGAAATCACTACTGAACACTTAATTTTTGCCTAGTGTTTTAGTCAGATTTAGTTCAGTTTGTGTAATTATTATAAGACTGTGGttttaatatataatacaatTCCATCCATTTTAATTGCCACACTCTCACATAAGTGTGTGCTTCTTGCTCATTGAGCTCTGACATAGCCTGCTCTTCTTTTGCTGacaattttcaaaaaaataaaaataaataaaaaacatgtttcacTGAGTGAAGCACTCACATGCTAAACCATCTTAAATGCTCAATCTTCCCTTGGTAATATCACCACCGTAACTGTAAATGAAGCTGTAGCTAAATAGCTAAAAGTATTGAGACAGCTGAGATATGCCAGCCTACATGTGAGACAAGTAGATTTCAGATTTCAGAAACATGGTGGGATACTGTATTACCTACTTTGTATGGTTCAAATGATTTGGTTCAGGTGAGCTGTATGGACAAATTACCCCCTATTAATTAACGTCCTCCCAAATTGAGTCATTGTAGCCACCTGAAAACTTGCTAAACTACAGTGGTCAATATGGTTCTATAGTTAGCCCTTTTCAAGGCTGGATAATGTGTATAGTCTCTAAGACCTTCGATTTGGCCTATTGcataaaaaaactattaaactaCGCATTTATTATTGTGAAGTCGAAAATATACTTTTTGGTTGAGGCTCCAACTAACAAACCTGAgacaactgatttttttttttttaccgtaaACTTAAGCTGTCTTTATTGAAAATGGCATAAAACATCAGAAGATACAGGCTACAGAACACCATGGGCATCCTTGCACTGACTCGAACTTCTAAGCTTTCTTTGAATTCTAGTGTCCAGATGCTGTGCAATTTCACAAACTAAATACAGTCATTGTATTGTAAATACAAAGTGGACATAAATAACGAGTGCAATTTTTGTACTGCTTTGCTTATTATAACTTTGGCAGTAAGGCATTGCCTATATGCAAACACTTTGAAACACAAAAGTGAGCAATTTAAACCTTGGCTCGAAAGCAGGCCTTTGAAAAGGACATGTCCACATTGGAAAATTAGTGAATAAGGCGTCCACTTCCatgttgtttgtcatttttaccCCTCCACCGGCCAGACTGGGATCATGTGACGCACAAAGAACATGCAGTAAGCAGtgcattttacacacacacgccccgGTATCAGATGATCAACGGATGTGCTCAAAACACCTTGTTTGCAGTCATTTGTTTTAGTATAACCAAGGGTTGACTGATTACAAGGGAGTAATCAAACCATGGTCACTTCCCGTAGGCCTACATGTTCAGACACAGATCCCAGCGGCGGAAGAGTCTTGTCTGCGCTTCACAGTTCTCCAGATAGCGTGGATTCACATCAAAACACAGCATTTAAGACAACTTTCTGATGGTGTTTTCCGTTTTTGTAAGGCTGCCCGTGTTGCAGTTTCGAATACCTCCCAGATCCCTTCCTTGGTTTTGGCAGAGCACTCCAAATAGGCATATGCGCCAATGCGCATGGCCATGGCCCGGCCATCCTCTGTTTTCACAGGCTCCAGCTTCAACCGGGACAGCTCGTTCTTTACGTTTTCATCGTTGCGCAGATCTTTCTTGTTGGCCACTAATATAATAGGTACATTCGGACAAAAGTGTTTGACTTCAGGGACCCATTTTTCAGGGATGTTTTCCAACGAGTCCGGGCTGTCCACGGAGAAGCACATCAGAATTACATCGGTGTCAGGATAGGAGAGGGGGCGCAGCCGGTCGTAGTCCTCCTGCCCAGCTGTGTCCCACAAAGCAAGCTGGACTTGCTTGTTGTCCACCTCTATGTCCGCCACATATGTCTCAAATACAGTCGGAACATACACCTCAGGAAATTCGTCTTTGCTGAATACAATCAGTAGACATGTTTTTCCACCTGCCCCGTCCCCCACCACGACAAGTTTCTTCCTAATGTCTGCCATTCCTGCCTTTTCCTACCTCTCGCTTAAATGTGACATCAAGAATAAAGATGTTCCCGGTGTAGCCTACTCACTAGGCTACCTCTGTTTTAGTATGCTACTCAGAAATAAAACTTGTCCCGTAAGGCCCTCCCGTCTTCC

Function

symbol description
rhob Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Involved in several processes, including cellular response to hydrogen peroxide; cellular response to ionizing radiation; and regulation of cell migration. Located in cleavage furrow and endosome membrane. Biomarker of breast cancer.

NR:

description
PREDICTED: rho-related GTP-binding protein RhoB

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252735 True 2924 lncRNA 0.40 1 22716970 22719893

Neighbor

gene id symbol gene type direction distance location
LOC120546322 apob coding upstream 1138 22700059 ~ 22715832 (+)
LOC120546321 NA coding upstream 29620 22671825 ~ 22687350 (+)
apobb.1 NA coding upstream 50227 22650242 ~ 22666743 (+)
pdia6 pdia6,LOC102796876 coding upstream 95865 22611027 ~ 22621105 (+)
LOC120547327 LOC104956175 coding upstream 125694 22589900 ~ 22591276 (+)
pum2 pum2,LOC102798245 coding downstream 222 22720115 ~ 22755144 (+)
LOC120546327 NA coding downstream 36125 22756018 ~ 22761558 (+)
laptm4a laptm4a coding downstream 42464 22762357 ~ 22774632 (+)
matn3a matn3,LOC103362679,LOC101066369 coding downstream 55744 22775637 ~ 22781793 (+)
ttc32 ttc32,LOC102775905 coding downstream 67199 22787092 ~ 22790555 (+)
G186506 NA non-coding upstream 179254 22535659 ~ 22537716 (+)
G186452 NA non-coding upstream 422273 22294442 ~ 22294697 (+)
LOC120547080 NA non-coding upstream 883188 21832948 ~ 21833782 (+)
LOC120546760 NA non-coding upstream 970416 21745581 ~ 21746554 (+)
G186297 NA non-coding upstream 1174189 21540588 ~ 21542781 (+)
G186622 NA non-coding downstream 79842 22799735 ~ 22800058 (+)
G186641 NA non-coding downstream 126979 22846872 ~ 22847674 (+)
G186697 NA non-coding downstream 297064 23016957 ~ 23018800 (+)
G186725 NA non-coding downstream 423537 23143430 ~ 23143648 (+)
G186726 NA non-coding downstream 424066 23143959 ~ 23144290 (+)
lin28b lin28b other upstream 415385 22280967 ~ 22301585 (+)
G186394 mycn,LOC108233328 other upstream 651381 21985779 ~ 22065589 (+)
erh erh,LOC100699790,LOC101174968 other upstream 769970 21944743 ~ 21947000 (+)
gtf2h5 gtf2h5 other upstream 1544331 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 2856753 19852643 ~ 19860217 (+)
kcns3b kcns3,LOC103372653 other downstream 87986 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 242140 22962033 ~ 22966010 (+)
dtl dtl other downstream 367927 23087820 ~ 23095505 (+)
ppp2r5a ppp2r5a other downstream 376019 23095912 ~ 23142640 (+)
rsph3 rsph3 other downstream 472745 23192638 ~ 23196996 (+)

Expression


Co-expression Network