RNA id: TU252735


Basic Information

Item Value
RNA id TU252735
length 2924
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G186578
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22716970 ~ 22719893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attttttttattggctTTCCCAAAACAGTACCGCTTGTTCCCTTACATTCTGGATTGTTTTTCCTCACAACAAATTTCATTGTTCCATTCAAACGAAATGATGTCATTGCAACAATGTGGTCATAATTTGACACACTCTTACAAatatgtttggcacattttcagcatttttcttctccaaaattccattgttttatttttcaaaacaagaaaattaaagaaaaacatgctctgcttTGTCTGATCAGTGAATAATAACCTAACAACATTGGAAATGAGGCACATGAGGGGGGCCAGTGTGGGAAAATTAACCAGTCCAGCACAATGCATTCCTGTCCTGTAAGTCAGCAAAAAGCCCAGCAACAGAAGACAGGGAGGAATGTGACTTTTACACCATTGTGACTCTGGCTGGATTTATAAAAGATACTTTTTTAAAACTCAGATTCATCTTCACTATGGTTACTACTGTTTACTGAACCACAGAAAAAATGACATGTTTAAAGCAAAGATAATAAAGTGCATAGTAAATCCACCAGGGTTTTACCCTGAATTTCCAGTGTTGCAACACCGTCTGTAATTGATAATCATAGCTGTCATTTTAACAACAAGCGCTCACATCATCTGTAAGGGAAAAGTAACACAACATTTCTAGTCAGATCAGACGTAGAAGTAtgaaaaataaactcaaatacaTTGATTTCTGTTGCTAACTTCAAAGCTCCAAATACATGTGAGATACATGCAGTCATAAAGGAAGACATTAAGATGTTTTTGTTCCTAATTCAGTTGTAGTGCTGTAAACAAACTTTAACATCTTCAGAAAAGAAATCACTACTGAACACTTAATTTTTGCCTAGTGTTTTAGTCAGATTTAGTTCAGTTTGTGTAATTATTATAAGACTGTGGttttaatatataatacaatTCCATCCATTTTAATTGCCACACTCTCACATAAGTGTGTGCTTCTTGCTCATTGAGCTCTGACATAGCCTGCTCTTCTTTTGCTGacaattttcaaaaaaataaaaataaataaaaaacatgtttcacTGAGTGAAGCACTCACATGCTAAACCATCTTAAATGCTCAATCTTCCCTTGGTAATATCACCACCGTAACTGTAAATGAAGCTGTAGCTAAATAGCTAAAAGTATTGAGACAGCTGAGATATGCCAGCCTACATGTGAGACAAGTAGATTTCAGATTTCAGAAACATGGTGGGATACTGTATTACCTACTTTGTATGGTTCAAATGATTTGGTTCAGGTGAGCTGTATGGACAAATTACCCCCTATTAATTAACGTCCTCCCAAATTGAGTCATTGTAGCCACCTGAAAACTTGCTAAACTACAGTGGTCAATATGGTTCTATAGTTAGCCCTTTTCAAGGCTGGATAATGTGTATAGTCTCTAAGACCTTCGATTTGGCCTATTGcataaaaaaactattaaactaCGCATTTATTATTGTGAAGTCGAAAATATACTTTTTGGTTGAGGCTCCAACTAACAAACCTGAgacaactgatttttttttttttaccgtaaACTTAAGCTGTCTTTATTGAAAATGGCATAAAACATCAGAAGATACAGGCTACAGAACACCATGGGCATCCTTGCACTGACTCGAACTTCTAAGCTTTCTTTGAATTCTAGTGTCCAGATGCTGTGCAATTTCACAAACTAAATACAGTCATTGTATTGTAAATACAAAGTGGACATAAATAACGAGTGCAATTTTTGTACTGCTTTGCTTATTATAACTTTGGCAGTAAGGCATTGCCTATATGCAAACACTTTGAAACACAAAAGTGAGCAATTTAAACCTTGGCTCGAAAGCAGGCCTTTGAAAAGGACATGTCCACATTGGAAAATTAGTGAATAAGGCGTCCACTTCCatgttgtttgtcatttttaccCCTCCACCGGCCAGACTGGGATCATGTGACGCACAAAGAACATGCAGTAAGCAGtgcattttacacacacacgccccgGTATCAGATGATCAACGGATGTGCTCAAAACACCTTGTTTGCAGTCATTTGTTTTAGTATAACCAAGGGTTGACTGATTACAAGGGAGTAATCAAACCATGGTCACTTCCCGTAGGCCTACATGTTCAGACACAGATCCCAGCGGCGGAAGAGTCTTGTCTGCGCTTCACAGTTCTCCAGATAGCGTGGATTCACATCAAAACACAGCATTTAAGACAACTTTCTGATGGTGTTTTCCGTTTTTGTAAGGCTGCCCGTGTTGCAGTTTCGAATACCTCCCAGATCCCTTCCTTGGTTTTGGCAGAGCACTCCAAATAGGCATATGCGCCAATGCGCATGGCCATGGCCCGGCCATCCTCTGTTTTCACAGGCTCCAGCTTCAACCGGGACAGCTCGTTCTTTACGTTTTCATCGTTGCGCAGATCTTTCTTGTTGGCCACTAATATAATAGGTACATTCGGACAAAAGTGTTTGACTTCAGGGACCCATTTTTCAGGGATGTTTTCCAACGAGTCCGGGCTGTCCACGGAGAAGCACATCAGAATTACATCGGTGTCAGGATAGGAGAGGGGGCGCAGCCGGTCGTAGTCCTCCTGCCCAGCTGTGTCCCACAAAGCAAGCTGGACTTGCTTGTTGTCCACCTCTATGTCCGCCACATATGTCTCAAATACAGTCGGAACATACACCTCAGGAAATTCGTCTTTGCTGAATACAATCAGTAGACATGTTTTTCCACCTGCCCCGTCCCCCACCACGACAAGTTTCTTCCTAATGTCTGCCATTCCTGCCTTTTCCTACCTCTCGCTTAAATGTGACATCAAGAATAAAGATGTTCCCGGTGTAGCCTACTCACTAGGCTACCTCTGTTTTAGTATGCTACTCAGAAATAAAACTTGTCCCGTAAGGCCCTCCCGTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252644 lncRNA upstream 179254 22535659 ~ 22537716 (+) True G186506
TU252572 lncRNA upstream 415487 22300784 ~ 22301483 (+) False lin28b
TU252574 lncRNA upstream 422273 22294442 ~ 22294697 (+) True G186452
XR_005637027.1 lncRNA upstream 883188 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 970416 21745581 ~ 21746554 (+) True LOC120546760
TU252803 lncRNA downstream 79842 22799735 ~ 22800058 (+) True G186622
TU252810 lncRNA downstream 89327 22809220 ~ 22809461 (+) False kcns3b
TU252843 lncRNA downstream 126979 22846872 ~ 22847674 (+) True G186641
TU252914 lncRNA downstream 242158 22962051 ~ 22966010 (+) True si:ch211-22i13.2
TU252933 lncRNA downstream 297064 23016957 ~ 23018800 (+) True G186697
XM_039781184.1 mRNA upstream 1138 22700059 ~ 22715832 (+) True LOC120546322
XM_039781182.1 mRNA upstream 29620 22671825 ~ 22687350 (+) True LOC120546321
XM_039781181.1 mRNA upstream 50227 22650242 ~ 22666743 (+) True apobb.1
XM_039782335.1 mRNA upstream 95865 22611027 ~ 22621105 (+) True pdia6
XM_039782336.1 mRNA upstream 95865 22611027 ~ 22621105 (+) False pdia6
XM_039781195.1 mRNA downstream 222 22720115 ~ 22755144 (+) False pum2
XM_039781194.1 mRNA downstream 223 22720116 ~ 22755144 (+) False pum2
XM_039781189.1 mRNA downstream 223 22720116 ~ 22755144 (+) False pum2
XM_039781188.1 mRNA downstream 223 22720116 ~ 22755144 (+) False pum2
XM_039781199.1 mRNA downstream 223 22720116 ~ 22752762 (+) False pum2
TU252499 other upstream 651381 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 769970 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2856765 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3068814 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3177762 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 858485 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 858485 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1359710 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1787020 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2284126 25004019 ~ 25009407 (+) False lama2

Expression Profile