G186882 (hsp90ab1)


Basic Information

Item Value
gene id G186882
gene name hsp90ab1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23602636 ~ 23607535 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU253166
AGGTATTacatctttaattttttttgcaaaacaagACTTGGAATACAGACAAGCCCGGACTCAGGCAAAGGAATCATACAGTCCTCTCTCCATGCAGCGTGCAGTGTTGCACATGAGCAGAACCTCCCCAAACCCTCCAGACCTAATCTGATAATGGAATGTACCATTCCCATGTTCACACATTTACCACTCCAACATTTAAAACTCAGTGCAACAGGGTACTCGTTAAAACATACGTGTTGTCACCATGAACTTATACAGCAAAAACCAAAACCGCTTTTCTTAAGGTCTCGCAGAGTAACACTCTGGACGCAAGAGCAACACCGGTCCACCACATAACATGAATGACTATTTGTTTTGCAGTAACTGCCTTTTTAAGGATGAACAATTGAAAAGTGAGGCTAAAGTGTTAGAAATCTGGGGGGGTGGGTTGTTTAATCAACTTCTTCCATACGTGAAGCATCATCTTCACCGTCGCCTTCTAGGGGAGGGATCTCATCTGGGACGGCTGTAGAAGTGGCCTCCTCTGCGGGGACGTCGTCGTCATCGATACCTTCCGAGTTTGATCATTCTGTAGATTCGGTTGGAGTGGGTCTGTGGGTCATCCAGGGAGAAGCCTGAGGACAGCAGGGCAGTTTCGAACAGCAGGATGACTAGGTCCTTCACAGCCTTGTCGTTCTTGTCAGCATCTGCCTTCTGCCGGAGAGTCTGCACGATGGGGTGGTCAGGGTTGATCTCCAGGTGTTTCTTGGCCATCATGTAGCCCATGGTGGAGTTGTCCCTGAGTGCCTGGGCCTTCATGATCCTCTCCATGTTGGCCGTCCAGCCGTAAGTACTCGTCACAATACAGCAGGGGGAAGACACCAGTCTGTTGGACACGGTCACCTGGTAGAGACAGCCGATCAGAGGACATTTAGACTCAACACAACATGCAATTAGGCATCTTGACAACAGGCAGACCCATtctaaagttaataaaaacCATGCAGAACAGTCATGTTAGAAATAAATGCTTAACACACCAGCATGGCCAATTCCACCACATCTTCTGTCTAAATTtcatatacaacacacacacacacacacacacacattgtgacCAGTAAAATATTTAGACCAAATGGGTAAACTTCAGCTCATAATTCTAGTTTCacaaactgtaaaaaacaaaacaggcatGTTAGATCACACTCAGAAGTTACTTCAGGTTCTTGGCTTTACATCTCCACAATCATTTGGAACCGGTCACTCGTCAAAACACATTTGTCAATCAAAAACTCATTCAGGACAAAGACTTGAGGGACCTCCTTGCAGCTGTATTGAACTCACCAGAATACAAGTTAGGACCAGTTAGGGCACCTGTTTCCAAACAAAACACTGTCAACTGTAGTTGTGAAGTCCTAAGAACCTAAATGAAGGAACATTTGGTCAACATGAATATTGGCTCATTAGGATTACTGACCTTCTCCACTTTCTTGTCAAGAATCTCTTTCATGAGCTTGCAGAGGTTCTCAAAATTAGCCTTATCCTCCTCcatctttttcttctcctcttcatcctctggCAGCTCCAGCCCCTCCTTGGTGACTGAGACCAGGCTTTTGCCATCaaactccttcagctgctggACACAGTACTCGTCAATGGGCTCCGTCATGTACAGGACCTCGAAGCCACGCTTGCGGACGCGCTCGACGAAGGCCGAGTTGGCCACCTGATCCTTGCTCTCACCTAGGAGAAGTCAATAATGTAGTAGATTGACTTCTGGTTCTCCTTCATGCGAGTCAGGTACTCCGTGAGGGAGGTTGTCTCATCTCCAGACTGGGAGCTGTGGTAGCGCAGCAGCTCAGACAGCTTCTTGCGGTTTTGAGAGTCCTCATGGATGCCCAGCTATAGATAACAAATTGTGATTATATGCCcattcaaaaacaaaatttCATACACCAGTAACCTATATCACAATGCAAGATTAAATTGATTAACCAGCAACATTTGACTTTATTAAATACTCAACTGATCATGTTGCATTGCAAATACAAACGCcatctttttaaaatgaatacgCTTATAGTACACACTCCAATCAGGTTACGAGTTACTAATCATGACTACAGCATTAAGTGACTGTACCAAGAGGTACGTACACTTAGCACAACTCCATGAGATTATTAAATGGTTGACAATATACTACAACTAGTTGCACCAGCTATCTAGGGCCTTTAAAATGTCTGGCCAATAAATCTATGACTAGGCTGCCTTAGAAAGCTAGAAGGTACagctagatttaaaaaaagataagacTAATGAATCCATGGAGGTGCACTGAAGAGGAGGAGTGCATTATGAAAGAGGAACTTCCATTAAGAACTTTATGATTAtacttaatatttattttaccttGATGTTCTTGGAGAAACCTTCGTACAACTTCTTGTAGTTCTCCTTGTCCTCGGCCAGTTCGGCAAAGAGCTCCAGACACTTCTTGACAATGTTCTTGCGAATGACTTTGAGGATCTTGCTCTGCTGCAACATTTCTCGGGAGATGTTGAGAGGCAGGTCCTCAGAGTCGACCACACCACGGACAAAGTCTGGAGATCAACACAAAACATTGCTTATTGGAACCATCTCAACATTTAGCCTTTGTATCCCATCCAGCAAAACAGCTTTGTGTAGGGGAGGTAAGAGTCAGTGCAGtgatgtaacacacacacactttgtccgagatggaaaaaaaagccAAGCGAACTTACTCAGGTACTCTGGGATGAGCTCTTCACAGTTGTCCATGATAAAGACTCGCCTAACGTACAGCTTGATgttattcttctttttcttgttctCAAAGAGGTCAAAAGGTGCACGGCGGGGAACAAAGAGCAGGGCCCGGAACTCGAGCTGGCCCTCCACGGAGAAGTGCTGACAGCCAGGTGATCCTCCCAGTCATTGGTCAGACTCTTGTAGAACTCTCCATACTCTTCATTTGTGATGTCGTCGGGGTTCCTAGTCCAGATGGGCTTGGTCTTGTTCAGCTCCTCCTCATCGATGTACTTCTCCTtgatcttctttttcttcttcttgtccttGTCTTTGGAGTCCTCCTCATCATCTGATCCCACATCTTCAATCTTTGGCTTGTCCTcaccctcctctttctcctccttctctgccTTTTCCTCCTCTGCCTCGTCATCACTGATCTCCTTGTCACGCTCCTTCTCCACCTGTGAATCAAAAACGTTTAACTTCACTGATCTGGAAACAGTTTTAACTAGACTGAAATAAATAGTCAAAATGTAATCCTTACAAACAGGGTGATGGGGTAGCCAATGAACTGAGAGTGCTTCTTGACAATTTCCTTGATCCTCTTCTCCTCAATGTACTCTGTCTGGTCATCCTTCAGGTGTAGGATGATCTTGGTTCCACGACCAATGGGCTCGCCTGTGAACAGAATTGTACAGCCACACGTAAATCTAATGTTAGGCGATAATGGTGTCAGATGCAAAGGTTAAAGTATCGTAATTTCACACTGTAAATTACCCTTATAGTAATTTTCACACCTAGTGCCAAAGTTAACTTATGGAACTAGATAAATAACGCCACGCCAAAACAAGTGTGCATAGGGCCTGATGTCAGTGACAGCAACTAGCAAATGATGCAAACAATGTTCCAGATGTATCGCACAGGCCATAATTCTATGTAACAGACCTTATTTGCAAACATTTTGGATTATGCGAATGTTGCCAATCTCGAGCACTTTGTGTAACTGCCAGGAAACGTACCGCTGTCAACCTTGACTGTGAAAGAACCTCCAGCAGAGGACTCCCACACGTACTGCTCATCATCATTGTGTTTAGTGATGACAACCACCTTCTCAGCAGTAAGGTAGGCAGAGTAGAAACCCACACCAAACTGACCGATCATGGAAATGTCAGCTCCAGCCTAGAGGCCTCCATGAAGGCCTTGGTGCCAGACTTTGCGATGGTACCCAGGTTGTTAATCAGGTCGGCTTTGGTCATGCCGATTCCAGTGTCCGTGATGGTCAGGGTGCGTTCAGCTTTGTTGGGGATGATGTCAATTTTCAGATCCTTGCCACTGTCCATCTTGGTGGGATCAGTCAGGCTTTCATAGCGAATTTTGTCCAAAGCCTGTAAAACACAATGACAATACATCAAGACTTTGATACCATTTTGAAAGTATGCA

Function

symbol description
hsp90ab1 Predicted to enable several functions, including ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Acts upstream of or within blood vessel development and leukocyte migration. Predicted to be located in dynein axonemal particle; extracellular region; and nucleus. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in cytosol; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye and head. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to several human genes including HSP90AB1 (heat shock protein 90 alpha family class B member 1).

NR:

description
PREDICTED: heat shock protein HSP 90-beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253166 True 4200 lncRNA 0.45 5 23602636 23607535

Neighbor

gene id symbol gene type direction distance location
slc35b2 slc35b2 coding upstream 5237 23589968 ~ 23597399 (+)
rnf8 NA coding upstream 48370 23548578 ~ 23554266 (+)
mia3 mia3 coding upstream 62792 23522887 ~ 23539844 (+)
hlx1 hlx,LOC102784911 coding upstream 207300 23391206 ~ 23395336 (+)
slc35f6 slc35f6 coding upstream 221422 23371884 ~ 23381214 (+)
rbm25b rbm25,LOC108233444,LOC103353665,LOC102789801 coding downstream 3474 23611009 ~ 23624138 (+)
atp6v1d atp6v1d coding downstream 33340 23640875 ~ 23644644 (+)
tmem121ab tmem121,LOC101465360,LOC102792477,LOC107377718 coding downstream 422518 24030053 ~ 24068592 (+)
nt5c1bb LOC104946496,LOC101163217,LOC103359106 coding downstream 599791 24207326 ~ 24215960 (+)
si:dkey-174m14.3 LOC102302461,LOC103359114,LOC101468873,LOC102795766,LOC102194912 coding downstream 617522 24225057 ~ 24252680 (+)
LOC120546283 NA non-coding upstream 96072 23475699 ~ 23506564 (+)
G186841 NA non-coding upstream 163116 23438240 ~ 23439520 (+)
G186843 NA non-coding upstream 167285 23435136 ~ 23435351 (+)
G186842 NA non-coding upstream 170253 23420899 ~ 23432383 (+)
G186747 NA non-coding upstream 327176 23268798 ~ 23275460 (+)
G186901 mpp5 non-coding downstream 40044 23647579 ~ 23649568 (+)
G186902 mpp5 non-coding downstream 42861 23650396 ~ 23658430 (+)
G186905 gphn,LOC106608213 non-coding downstream 59402 23666937 ~ 23668127 (+)
G186954 NA non-coding downstream 221990 23829525 ~ 23861934 (+)
G186961 NA non-coding downstream 260745 23868280 ~ 23925648 (+)
nfkbie nfkbie other upstream 12947 23578378 ~ 23589689 (+)
tcte1 NA other upstream 38207 23559498 ~ 23564429 (+)
rsph3 rsph3 other upstream 405640 23192638 ~ 23196996 (+)
ppp2r5a ppp2r5a other upstream 459996 23095912 ~ 23142640 (+)
dtl dtl other upstream 507131 23087820 ~ 23095505 (+)
G186975 NA other downstream 472068 24079603 ~ 24083104 (+)
LOC120547070 NA other downstream 537462 24144997 ~ 24146762 (+)
extl3 extl3 other downstream 547952 24155487 ~ 24187864 (+)
G187094 bpnt1,LOC102799416 other downstream 899378 24506913 ~ 24507813 (+)
lama2 lama2,LOC104942190 other downstream 1202544 24810079 ~ 25009457 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location