LOC120547013


Basic Information

Item Value
gene id LOC120547013
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11221626 ~ 11260823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637013.1
GAGGGCGGGAATAACGTGACGCAGCAGAGAGACGAGACCCAAAGAAACCATGAAAGAAAGGTGGCGGCGGCATACCGtttatgtttatatactgtccatGGGCATACACCCAAAAGTTGGTCGGTAGCACGCCATTAAATAAAGAAGAATAATAAAGAAGATACGCAAACGGGGAGAAGACAACATGGAGCTGGGAGAAATATTGAGAACACTAGGATagcaaagctagctagcttggctAACATGGAAGTTAACAGACAAAGCTGTAGCGGTGGACAATAATGCACAATTCTTGTTTAATGCAGTTGATTAACGTTAAGGGCAAAAGTTTGTTTTCGTGTGTCTGGCTAAGCTGAAGCTGACGTCGGTTGGTTGCTGAACCAGAGGACGCCATTTCGGACCGGAGAGGATGGTGTGTTTCCTGCTGCTGAGGACTTCGCTGTCTCGTTTCATCTTTCGGACTTGAACTGTGTTTCCCGGACTGACGCCTAACTcTGCCGCGACTTAAATCCTGAGATAGGGGTCATGAAAAAAAATCCCTGAAAGAGAAATTGAAATAGAaactgaagaagaggaggatgtgTGGGTTCAGTTTGGCAAACATCAACAATTTCATTCGCCATGTGAGGCCTGAGATGTGACAGTTTGACAAGTGGAAACCTCTGGGGAGATGCCTCCCATAACCCTGCATGAAATGAAATCTGGATTATCAGAGCTATCCATGAAGGACACCATTGGCCAGACATGAACTGCACAGTCACTGTGTGTATAAGCGTGTGTCCCGCAGAAAGTAACTATCTTCACAGACGTATCCACAGAGTAATTTAAAATAAGGTAAAACCAGTGAACAGTAGAGAATATGCAATGATTTGTGATCCAGTACGTGCTGTGCCTCGTACAGGACCGAGATGCTTCCTAACAACAGTTGAGATTGAACATGTTTTATGTGAGTTTTCCAGCAGAGGTTGTGGTCTAATATCACACCTAGAAATGTACATACACGCTTTCAACATTCACACCATCTATTTTAACATGTACTTGATTGTTTGACGTAGAATTTCCAACATGCTTGAAtttaattgtaatttattaCTGTCAAACCACCTTTTTAATTTGCTCATTTCAGATGTGATTAACTCCAGAAGCTGATGCAAATCCTCTCTGATACAAAAATTTGTATCTGCAAATCGGACACATTTTTAgaatgtatagtatgtttaGAAGGATGTTTTACGTAAGTCATTTATGtagagaataaaaaaagaattggcCCCAACACTGATCCCTGGGGGACACCACAAGCAATGTCCAAACAACATGTATTCACCCATCTTCACTAACGGTTGCCTGTTATAAAGATAGCTTCTCAGCCAGTTCAAAACAACCCCACTGATACCATACCGTTCTAGTTTACTGATGAATCTGTTATGATTTATTGTATGGAATGCTTTCTTCAGATCAATAAATACCCCAGCTGCATATTTGA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637013.1 True 1486 lncRNA 0.41 2 11221626 11260823

Neighbor

gene id symbol gene type direction distance location
flrt2 LOC104961132,LOC103360508 coding upstream 15259 11032427 ~ 11206367 (+)
LOC120547319 NA coding upstream 446643 10770950 ~ 10774983 (+)
LOC120547318 NA coding upstream 453644 10761564 ~ 10767982 (+)
LOC120547237 NA coding upstream 465462 10751031 ~ 10756164 (+)
clmnb NA coding upstream 477082 10734648 ~ 10744544 (+)
LOC120547014 LOC103358937 coding downstream 239146 11499969 ~ 11509379 (+)
LOC120547310 psma6,LOC103358936,LOC105930638,LOC102217550,LOC103457804,LOC107095481,LOC106935624 coding downstream 275488 11536311 ~ 11543978 (+)
LOC120547096 brms1l,LOC103358934,LOC100691440,LOC101472597,LOC102200527,LOC103380712 coding downstream 317346 11578169 ~ 11590546 (+)
gtf2a1 gtf2a1 coding downstream 612153 11872976 ~ 11886364 (+)
LOC120546813 cep128 coding downstream 629173 11889996 ~ 12003884 (+)
G183627 NA non-coding upstream 4470 11216953 ~ 11217156 (+)
G183620 NA non-coding upstream 264337 10956948 ~ 10957289 (+)
G183615 NA non-coding upstream 299571 10921825 ~ 10922055 (+)
G183610 NA non-coding upstream 309519 10903691 ~ 10912107 (+)
G183597 NA non-coding upstream 323013 10820464 ~ 10898613 (+)
G183648 NA non-coding downstream 107378 11368201 ~ 11368530 (+)
G183655 NA non-coding downstream 186348 11447171 ~ 11447408 (+)
G183687 LOC104952422,LOC104931204 non-coding downstream 285041 11545864 ~ 11548340 (+)
G183696 NA non-coding downstream 296701 11557524 ~ 11557793 (+)
G183700 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 non-coding downstream 307462 11568285 ~ 11634404 (+)
G183540 sf3b6,pm14,SF3B6 other upstream 555154 10622736 ~ 10666472 (+)
cdc42bpab fzd3,LOC103374788 other upstream 821814 10236949 ~ 10399812 (+)
LOC120546402 NA other upstream 1108991 10111070 ~ 10112635 (+)
il17a/f3 NA other upstream 1619278 9595376 ~ 9602348 (+)
pnocb LOC103362991 other upstream 1717352 9469609 ~ 9504274 (+)
ches1 foxn3 other downstream 503320 11764143 ~ 11869192 (+)
bcl11bb LOC103368061 other downstream 1446395 12707218 ~ 12739384 (+)
LOC120546167 NA other downstream 1686176 12946999 ~ 13008411 (+)
G183994 phip other downstream 1884652 13145475 ~ 13247416 (+)
LOC120546706 wdcp other downstream 2207412 13468235 ~ 13474159 (+)

Expression


Co-expression Network