LOC120548033


Basic Information

Item Value
gene id LOC120548033
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 12007635 ~ 12017653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU262393
AGGGCTTTTGTGTCAGCAACATTACTCACTCAAGGCCCTGCCTCCCAGGTAACTACACTGCTGAGTTGGTGCTGCTGCAGGGAGGGACAGTACACAGCCTCTGCACAACCCTCACAAAATGTGAATCCACAATACGATagccagagaagaagaaaaacaaatcaatcaCCTGAGGAAGCTGACGGAGAATTCCTGCGAGACTAAAAAGTTCTTTACCAAAATCAGACTTGAATATCAACATTTCTAAACACTCTCATGCTAAAACAACATGCCCCATCCAGGACTTGCCCAACTCCAGAGTCAGGACA
>XR_005637131.1
CCGCCATCTTGGACTACTGAAATCTAACGTGGCTGACGTCAAAggagctttttttcttctcacgCTGTCTGCTGAAGTTCATGCCGCCCGAGGCTGCTGCAGCTGGCTTGGATGCACACAGTCATTTGCCATATTGCTTTAAAAAGTGACGAAGACACTGCATTGCAATCTTACAAAAGTCCCTGGGGGAAAGCGATACTTTTGCTATCCAGCCTGTAACAGCTCTGAGCTGGACTGTATCTCCTCCTCGCCATCTGAATCTGGACCCTCCAAATCTACACCAGGACCTGGAAGTCTCCACATGTGGGAGCCAGACAGCAGGTGTGCTGACTCTCCTCCCACAAAAGGAAGACTCTTCTCCCCTGGTGACGGCCTCATGCGGCCTAGGGAGTGATGTTGAGGCTTCTTCTTGCACAGAGGTCACAGAAAGCAACTGGATATTGAGGAATCTGCATCAGGTCACTTTCAGCTCCAACTACCTTGACCCCTATGTGTATCAAGGCTATGAGACTGTCAGTCACAGGTACCTCTACGCTCACCCCTCTGACATATCTGGCTTTGTGGATAAAGGCTTCCCACCCTGCACTCAGATTCATCTTGATAAAAGGGAGCCAGAGTTTGGTTGCTGAATCAACAGCATTGTTGCCAGGTTGTCATGGTGTCTGATTGTTGAGTATCATGTCACGCACCTCATCACAGCCGGACGTCCCTCTTAGCCTGCAGCCGATCCCATGGTCGCCATGACGTTTACCTTGGCAACCACAAGAGGCTGGCAAAGACTGGGGTGCCAGGAGAAGGTGGTGGCGTTGTGTCACCTCATGTCATAAGTCAAGTCTCCAAACACTAACCAAAGTCATTTTTGGAGAAGCTTTTTCCATTGAGGTTCAGTATTTGGAGGTAGTTGATAATTGCAGACATAGAGCATCAAACAGAgcataaacataaaataaaaaaaaaaaagttaaatctgTTCCTATGGTATGTTTTAAAGTTAATATGACAGTGGGTGGACGATGGCAACCACCAAAGTATGCAGTATACCCTTTAAACTCCTCACACTGCCTACAAACTGTAGTAATAAAAAGCTAAGAATTTTAACAAAAGTCTTTCATTAATTAGAAACCTATTTTGGAATTGAGCGCAAGTAACACTTGGATAACAGCTTACCAGTGGTAAACCAGGACCCGGGGCTCTCCAGGATCCTGGTGTCTCCAGGGCACCGAGCCCTCGGGGGCAGGAGTCTGAAAGGGAAAGCCAGGGAGAAGACTCCGAGGCCAGGCTAGCTAACTCGCCAGCAGGGGATCTCATCACTCTCTCCACACTTTTGCTGTCAGGGCTTTTGTGTCAGCAACATTACTCACTCAAGGCCCTGCCTCCCAGGTAACTACACTGCTGAGTTGGTGCTGCTGCAGGGAGGGACAGTACACAGCCTCTGCACAACCCTCACAAAATGTGAATCCACAATACGATagccagagaagaagaaaaacaaatcaatcaCCTGAGGAAGCTGACGGAGAATTCCTGCGAGACTAAAAAGTTCTTTACCAAAATCAGACTTGAATATCAACATTTCTAAACACTCTCATGCTAAAACAACATGCCCCATCCAGGACTTGCCCAACTCCAGAGTCAGGACACAggcagaagggagggagggaggggggggtggggatCCCTGTAGATCCATCACACTCCTTTCCTCTCTGGTAGGCGCTACAGAACAACCAGACAAAATAACTTTAGTACTTGTTTATGAACAGTTAAATCAGTTACAACAccaattttgcttggatataaaagagattatCAGAGAATTTATGCTGTAAATTTTACAAGCAAAAAGCAaccctcaaatattttttataatgcaccaggtcAATGTTTTTGACCCCCCCAAAAGGGGGTAAATTCACCACATCCATTTTAAAAaccatatattaaaaaaaatcaatttcaggattttattaatcaatataggatcactcaaacaaagattgGTTTTAATTGtagaatcgattattttaatCCAGCACTacttttttatatactgtatgtatgtgtatgtatgtatgtatgtatgtatatgtcatCCTGAACATTGTTCTTGGAACTGTAAGTGCATTGAGCGACACTAGAAACTCAAATTGTATGATTAAACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262393 False 308 lncRNA 0.46 1 12016822 12017129
XR_005637131.1 True 2164 lncRNA 0.44 3 12007635 12017653

Neighbor

gene id symbol gene type direction distance location
LOC120548087 LOC103370708 coding upstream 21687 11936325 ~ 11985948 (+)
LOC120547506 NA coding upstream 80202 11924094 ~ 11927433 (+)
tnfaip3 tnfaip3 coding upstream 297229 11697606 ~ 11710406 (+)
LOC120548093 perp coding upstream 314395 11681816 ~ 11693240 (+)
LOC120547549 tmem26 coding upstream 328524 11669373 ~ 11679111 (+)
ifngr1l NA coding downstream 67097 12084750 ~ 12104791 (+)
il22ra2 NA coding downstream 89783 12107436 ~ 12113315 (+)
pcnx2 pcnx2 coding downstream 124742 12142395 ~ 12175956 (+)
LOC120548561 LOC104931072,LOC103359313,LOC101484981,LOC102207276 coding downstream 358869 12376522 ~ 12402596 (+)
wapla wapl coding downstream 388272 12405925 ~ 12425164 (+)
G193213 NA non-coding upstream 15927 11987274 ~ 11991708 (+)
G193172 LOC107099926,LOC104931217,LOC103370571 non-coding upstream 215678 11786413 ~ 11791957 (+)
G193161 NA non-coding upstream 291785 11715216 ~ 11715850 (+)
G193047 NA non-coding upstream 588533 11394094 ~ 11419102 (+)
G193041 NA non-coding upstream 621310 11383093 ~ 11386325 (+)
G193295 NA non-coding downstream 159932 12177585 ~ 12178477 (+)
G193296 NA non-coding downstream 161138 12178791 ~ 12180953 (+)
G193373 NA non-coding downstream 447944 12465597 ~ 12465813 (+)
G193392 NA non-coding downstream 749615 12767268 ~ 12767474 (+)
G193393 NA non-coding downstream 826419 12844072 ~ 12844380 (+)
zbtb18 zbtb18,LOC102787611 other upstream 116432 11856987 ~ 11891203 (+)
sdccag8 sdccag8 other upstream 217096 11717893 ~ 11790539 (+)
rtkn2a rtkn2,LOC102197450,LOC101474298 other upstream 423463 11574398 ~ 11584172 (+)
prepl prepl,slc3a1 other upstream 639012 11357040 ~ 11368623 (+)
G192994 NA other upstream 855394 11150319 ~ 11152241 (+)
oprm1 LOC104946549,LOC106536872,LOC107375811 other downstream 229298 12246951 ~ 12278375 (+)
sf3b5 sf3b5 other downstream 269360 12287013 ~ 12290530 (+)
LOC120548560 plekha1,LOC103359314,LOC101483871,LOC102289782,LOC102791929,LOC104931082 other downstream 333670 12351323 ~ 12373271 (+)
chrm3a LOC101465548 other downstream 1105365 13123018 ~ 13209210 (+)
G193730 mettl10 other downstream 2056989 14074642 ~ 14076457 (+)

Expression


Co-expression Network