RNA id: XR_005637131.1


Basic Information

Item Value
RNA id XR_005637131.1
length 2164
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120548033
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 12007635 ~ 12017653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCCATCTTGGACTACTGAAATCTAACGTGGCTGACGTCAAAggagctttttttcttctcacgCTGTCTGCTGAAGTTCATGCCGCCCGAGGCTGCTGCAGCTGGCTTGGATGCACACAGTCATTTGCCATATTGCTTTAAAAAGTGACGAAGACACTGCATTGCAATCTTACAAAAGTCCCTGGGGGAAAGCGATACTTTTGCTATCCAGCCTGTAACAGCTCTGAGCTGGACTGTATCTCCTCCTCGCCATCTGAATCTGGACCCTCCAAATCTACACCAGGACCTGGAAGTCTCCACATGTGGGAGCCAGACAGCAGGTGTGCTGACTCTCCTCCCACAAAAGGAAGACTCTTCTCCCCTGGTGACGGCCTCATGCGGCCTAGGGAGTGATGTTGAGGCTTCTTCTTGCACAGAGGTCACAGAAAGCAACTGGATATTGAGGAATCTGCATCAGGTCACTTTCAGCTCCAACTACCTTGACCCCTATGTGTATCAAGGCTATGAGACTGTCAGTCACAGGTACCTCTACGCTCACCCCTCTGACATATCTGGCTTTGTGGATAAAGGCTTCCCACCCTGCACTCAGATTCATCTTGATAAAAGGGAGCCAGAGTTTGGTTGCTGAATCAACAGCATTGTTGCCAGGTTGTCATGGTGTCTGATTGTTGAGTATCATGTCACGCACCTCATCACAGCCGGACGTCCCTCTTAGCCTGCAGCCGATCCCATGGTCGCCATGACGTTTACCTTGGCAACCACAAGAGGCTGGCAAAGACTGGGGTGCCAGGAGAAGGTGGTGGCGTTGTGTCACCTCATGTCATAAGTCAAGTCTCCAAACACTAACCAAAGTCATTTTTGGAGAAGCTTTTTCCATTGAGGTTCAGTATTTGGAGGTAGTTGATAATTGCAGACATAGAGCATCAAACAGAgcataaacataaaataaaaaaaaaaaagttaaatctgTTCCTATGGTATGTTTTAAAGTTAATATGACAGTGGGTGGACGATGGCAACCACCAAAGTATGCAGTATACCCTTTAAACTCCTCACACTGCCTACAAACTGTAGTAATAAAAAGCTAAGAATTTTAACAAAAGTCTTTCATTAATTAGAAACCTATTTTGGAATTGAGCGCAAGTAACACTTGGATAACAGCTTACCAGTGGTAAACCAGGACCCGGGGCTCTCCAGGATCCTGGTGTCTCCAGGGCACCGAGCCCTCGGGGGCAGGAGTCTGAAAGGGAAAGCCAGGGAGAAGACTCCGAGGCCAGGCTAGCTAACTCGCCAGCAGGGGATCTCATCACTCTCTCCACACTTTTGCTGTCAGGGCTTTTGTGTCAGCAACATTACTCACTCAAGGCCCTGCCTCCCAGGTAACTACACTGCTGAGTTGGTGCTGCTGCAGGGAGGGACAGTACACAGCCTCTGCACAACCCTCACAAAATGTGAATCCACAATACGATagccagagaagaagaaaaacaaatcaatcaCCTGAGGAAGCTGACGGAGAATTCCTGCGAGACTAAAAAGTTCTTTACCAAAATCAGACTTGAATATCAACATTTCTAAACACTCTCATGCTAAAACAACATGCCCCATCCAGGACTTGCCCAACTCCAGAGTCAGGACACAggcagaagggagggagggaggggggggtggggatCCCTGTAGATCCATCACACTCCTTTCCTCTCTGGTAGGCGCTACAGAACAACCAGACAAAATAACTTTAGTACTTGTTTATGAACAGTTAAATCAGTTACAACAccaattttgcttggatataaaagagattatCAGAGAATTTATGCTGTAAATTTTACAAGCAAAAAGCAaccctcaaatattttttataatgcaccaggtcAATGTTTTTGACCCCCCCAAAAGGGGGTAAATTCACCACATCCATTTTAAAAaccatatattaaaaaaaatcaatttcaggattttattaatcaatataggatcactcaaacaaagattgGTTTTAATTGtagaatcgattattttaatCCAGCACTacttttttatatactgtatgtatgtgtatgtatgtatgtatgtatgtatatgtcatCCTGAACATTGTTCTTGGAACTGTAAGTGCATTGAGCGACACTAGAAACTCAAATTGTATGATTAAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262376 lncRNA upstream 15927 11987274 ~ 11991708 (+) False G193213
TU262377 lncRNA upstream 15927 11987274 ~ 11991708 (+) False G193213
TU262378 lncRNA upstream 15927 11987274 ~ 11991708 (+) False G193213
TU262379 lncRNA upstream 17420 11987274 ~ 11990215 (+) True G193213
TU262381 lncRNA upstream 17420 11987274 ~ 11990215 (+) False G193213
TU262489 lncRNA downstream 159932 12177585 ~ 12178477 (+) True G193295
TU262490 lncRNA downstream 161138 12178791 ~ 12180953 (+) True G193296
TU262594 lncRNA downstream 447944 12465597 ~ 12465813 (+) True G193373
TU262615 lncRNA downstream 749615 12767268 ~ 12767474 (+) True G193392
TU262616 lncRNA downstream 826419 12844072 ~ 12844380 (+) True G193393
XM_039784051.1 mRNA upstream 21687 11936325 ~ 11985948 (+) False LOC120548087
XM_039784048.1 mRNA upstream 21687 11956030 ~ 11985948 (+) False LOC120548087
XM_039784047.1 mRNA upstream 21687 11967642 ~ 11985948 (+) True LOC120548087
XM_039784049.1 mRNA upstream 21687 11967723 ~ 11985948 (+) False LOC120548087
XM_039782941.1 mRNA upstream 80202 11924094 ~ 11927433 (+) True LOC120547506
XM_039783906.1 mRNA downstream 67097 12084750 ~ 12104791 (+) False ifngr1l
XM_039783905.1 mRNA downstream 67099 12084752 ~ 12104791 (+) True ifngr1l
XM_039783437.1 mRNA downstream 89783 12107436 ~ 12113315 (+) True il22ra2
XM_039783438.1 mRNA downstream 124742 12142395 ~ 12175956 (+) True pcnx2
XM_039783439.1 mRNA downstream 124742 12142395 ~ 12175956 (+) False pcnx2
XR_005637161.1 other upstream 260933 11717893 ~ 11746702 (+) False sdccag8
TU262145 other upstream 639012 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 642031 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 855394 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 1051057 10953139 ~ 10956578 (+) False LOC120548129
XR_005637197.1 other downstream 229298 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 229298 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 269393 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 269393 12287046 ~ 12290232 (+) False sf3b5
TU262526 other downstream 269393 12287046 ~ 12290232 (+) False sf3b5

Expression Profile