LOC120548117 (LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262)


Basic Information

Item Value
gene id LOC120548117
gene name LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2193300 ~ 2200457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784136.1
cgtcttcttcttcttcttcttcttcgtgcAGCTGTTGGTGTCCGTCGACGTCCAGTCCCAACTCGGTTCGGTTTCTCTTCATTGATTCTTTTATAAACACATTTCCTGAAGATGTCCGGAGAAGATCTGCGGGCCGAGCTGGAGAAATACCTTCACTCTTTAAACATCCAGACCACCTGCGTGGAGCACCCGCCGGTGTTCACCGTGGAGGAGATGATGCCTCACCTGCAGGAGGTCACCGGAGCCGTCACCAAGAACCTCTTCCTGaaagacaagaagaagaaaagcctGTTTCTGGTGTCTGCTCGCCACGACCGCCAGgTGAACCTCAACGACCTCGCCAAGAAGCTCGGCGTCGGCAGCGGCAACCTGCGCTTCGCGGACGAGGCGGCCATGTTGGAGAAACTCAAGGTGGGTCAGGGCTGTGCGACGGCGTTGGCGCTGCTCTTCGACACGGAGCGAAGCGTGCGGGCGGTTCTGGACCGGGACCTGCTGGAGGGCGACCACGAGCGCGTCTACTTCCACCCGATGACCAACGCCGCCACGGTGGGACTCCGGCCAGACGACCTGCTGCGGTTCCTCCGGGAGACGGGACACGAGCCCATCCTGCAGGACTTCCTGTAGGAGGAGAgagcagatacacacacacacacacgcacacatacacatacatatacacacacacacacgcacatacacacagacagacacacgtata

Function

NR:

description
PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like

GO:

id name namespace
GO:0006450 regulation of translational fidelity biological_process
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784136.1 True 718 mRNA 0.58 4 2193300 2200457

Neighbor

gene id symbol gene type direction distance location
trnat-agu_15 NA coding upstream 71835 2121392 ~ 2121465 (+)
trnat-agu_14 NA coding upstream 74480 2118747 ~ 2118820 (+)
LOC120547899 LOC102301710,LOC107396804,LOC100696318 coding upstream 81429 2006144 ~ 2111871 (+)
trnat-agu_12 NA coding upstream 140299 2052927 ~ 2053001 (+)
trnat-ugu_6 NA coding upstream 147481 2045746 ~ 2045819 (+)
rps27a rps27a coding downstream 304310 2504767 ~ 2508381 (+)
LOC120548433 NA coding downstream 328723 2529180 ~ 2637276 (+)
LOC120548306 NA coding downstream 457400 2657857 ~ 2663678 (+)
LOC120548310 NA coding downstream 628602 2829059 ~ 2829748 (+)
znf365 znf365,LOC100708019,LOC101465348,LOC102787219 coding downstream 923310 3123767 ~ 3137751 (+)
G191241 NA non-coding upstream 442 2138882 ~ 2192858 (+)
LOC120548168 NA non-coding upstream 7715 2177872 ~ 2185585 (+)
G191218 NA non-coding upstream 39907 2090115 ~ 2153393 (+)
G191240 NA non-coding upstream 40364 2125202 ~ 2152936 (+)
G191213 NA non-coding upstream 76229 2101708 ~ 2117071 (+)
G191242 NA non-coding downstream 9576 2210033 ~ 2229106 (+)
G191270 NA non-coding downstream 65049 2265506 ~ 2390590 (+)
G191274 NA non-coding downstream 69173 2269630 ~ 2270193 (+)
G191276 NA non-coding downstream 93660 2294117 ~ 2301273 (+)
G191273 NA non-coding downstream 155387 2355844 ~ 2375789 (+)
G191236 NA other upstream 88603 2047957 ~ 2104697 (+)
G191230 NA other upstream 189072 2002812 ~ 2004228 (+)
G191212 NA other upstream 244066 1948390 ~ 1949234 (+)
G190785 NA other upstream 413318 1701556 ~ 1779982 (+)
G190758 NA other upstream 577754 1581834 ~ 1615546 (+)
LOC120548303 usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721 other downstream 68371 2268828 ~ 2316402 (+)
G191565 sptbn1 other downstream 555697 2756154 ~ 2761679 (+)
G191567 sptbn1 other downstream 561593 2762050 ~ 2766062 (+)
G191571 NA other downstream 570176 2770633 ~ 3018448 (+)
G191573 sptbn1,LOC107396444 other downstream 574851 2775308 ~ 2778367 (+)

Expression


Co-expression Network