Gene
RNA
| Item | Value |
|---|---|
| gene id | rps27a |
| gene name | rps27a |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053130.1 |
| NCBI id | CM020927.1 |
| chromosome length | 36824488 |
| location | 2504767 ~ 2508381 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| rps27a | Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a). |
| description |
|---|
| Zgc:66168 protein, partial |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02977 | RP-S27Ae, RPS27A, UBA80; ubiquitin-small subunit ribosomal protein S27Ae |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039784446.1 | True | 639 | mRNA | 0.56 | 6 | 2504767 | 2508381 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120548117 | LOC103362069,LOC108229017,LOC106525817,LOC101169632,LOC101471088,LOC100695262 | coding | upstream | 304310 | 2193300 ~ 2200457 (+) |
| trnat-agu_15 | NA | coding | upstream | 383302 | 2121392 ~ 2121465 (+) |
| trnat-agu_14 | NA | coding | upstream | 385947 | 2118747 ~ 2118820 (+) |
| LOC120547899 | LOC102301710,LOC107396804,LOC100696318 | coding | upstream | 392896 | 2006144 ~ 2111871 (+) |
| LOC120548433 | NA | coding | downstream | 20799 | 2529180 ~ 2637276 (+) |
| LOC120548306 | NA | coding | downstream | 149476 | 2657857 ~ 2663678 (+) |
| LOC120548310 | NA | coding | downstream | 320678 | 2829059 ~ 2829748 (+) |
| znf365 | znf365,LOC100708019,LOC101465348,LOC102787219 | coding | downstream | 615386 | 3123767 ~ 3137751 (+) |
| trnar-acg_20 | NA | coding | downstream | 641433 | 3149814 ~ 3149886 (+) |
| G191323 | NA | non-coding | upstream | 4557 | 2496445 ~ 2500210 (+) |
| G191309 | NA | non-coding | upstream | 9562 | 2437062 ~ 2495205 (+) |
| G191310 | NA | non-coding | upstream | 51204 | 2444673 ~ 2453563 (+) |
| G191306 | NA | non-coding | upstream | 69132 | 2421879 ~ 2435635 (+) |
| G191307 | NA | non-coding | upstream | 79745 | 2422853 ~ 2425022 (+) |
| G191329 | NA | non-coding | downstream | 1970 | 2510351 ~ 2512758 (+) |
| G191330 | NA | non-coding | downstream | 4461 | 2512842 ~ 2514250 (+) |
| G191333 | NA | non-coding | downstream | 14322 | 2522703 ~ 2523348 (+) |
| G191335 | NA | non-coding | downstream | 22443 | 2530824 ~ 2534932 (+) |
| G191336 | NA | non-coding | downstream | 25362 | 2533743 ~ 2534276 (+) |
| LOC120548303 | usp54,LOC106455943,LOC108247408,LOC104941643,LOC107104721 | other | upstream | 188365 | 2268828 ~ 2316402 (+) |
| G191236 | NA | other | upstream | 400070 | 2047957 ~ 2104697 (+) |
| G191230 | NA | other | upstream | 500539 | 2002812 ~ 2004228 (+) |
| G191212 | NA | other | upstream | 555533 | 1948390 ~ 1949234 (+) |
| G190785 | NA | other | upstream | 724785 | 1701556 ~ 1779982 (+) |
| G191565 | sptbn1 | other | downstream | 247773 | 2756154 ~ 2761679 (+) |
| G191567 | sptbn1 | other | downstream | 253669 | 2762050 ~ 2766062 (+) |
| G191571 | NA | other | downstream | 262252 | 2770633 ~ 3018448 (+) |
| G191573 | sptbn1,LOC107396444 | other | downstream | 266927 | 2775308 ~ 2778367 (+) |
| LOC120548437 | NA | other | downstream | 585586 | 3093967 ~ 3110958 (+) |
