LOC120548475 (ankrd2,LOC104955379)


Basic Information

Item Value
gene id LOC120548475
gene name ankrd2,LOC104955379
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 18136793 ~ 18143672 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784741.1
aattacttttttgactATTTTATCTTTTCTGTATCTTTGTATCAAACAGAGATGGAAGAGGTTgtgcagtgggcagccaatgtAATGGACCATAAAACAGCAATTGAAAAGAAAGATCAGGGCCTATGGATACTGCAGAAGTCATGAATGCAGCAAGTCAAGGCAAACTGACTGTAATAGACGTGTATCTGGATGATGGTGGGAACCCTAATGTCCACGATGAGTTGAAGAGGACAGCGTTACACCGTGCCTCTCTAGAAGGACACACTGCAGTTGTCCAAATGCTTTTAGAAAAAGGAGCCAATATCAACTTTGAAGACCAACTGGGCTCCAGTGCCATTCACTGGGCCTGCAGAGGGGGAAGCCTGAATGTTGTCAAAGCCCTTAAGGGCATCAGGGCTGACCTGAATGTTAGAGATAAGTTGTACAGCACTCCTCTGCATGTGGCCACAAGAACACTCCACAAGGCCATTGTGGAGTACCTGCTGTCCTGTGGTGCCAAAATCAACTCCAGGGATAGGATAGGGGACACAGCCCTGCATGATGCTGTGCGTCTCAACAGATACAATatattgactacCTGTAAGAAATGA

Function

symbol description
ankrd2 Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in heart and skeletal muscle. Orthologous to human ANKRD2 (ankyrin repeat domain 2).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784741.1 True 593 mRNA 0.46 8 18136793 18143672

Neighbor

gene id symbol gene type direction distance location
hps1 hps1 coding upstream 8174 18118701 ~ 18128619 (+)
got1 got1 coding upstream 97787 18034400 ~ 18039006 (+)
slc25a28 slc25a28,LOC102780376 coding upstream 133812 17996171 ~ 18002981 (+)
golga7bb golga7b,LOC106916418,LOC106964416,LOC103476897 coding upstream 238812 17881031 ~ 17897981 (+)
LOC120548084 avpi1 coding upstream 484932 17648655 ~ 17651861 (+)
LOC120547841 LOC103357730 coding downstream 181178 18324850 ~ 18335935 (+)
LOC120548534 hps6 coding downstream 366921 18510593 ~ 18515777 (+)
pprc1 pprc1,LOC102788406 coding downstream 416105 18559777 ~ 18570245 (+)
LOC120548592 NA coding downstream 425311 18568983 ~ 18569123 (+)
oga mgea5 coding downstream 427855 18571527 ~ 18586970 (+)
G194660 NA non-coding upstream 94735 18039223 ~ 18042058 (+)
G194659 NA non-coding upstream 105175 18031409 ~ 18031618 (+)
G194617 NA non-coding upstream 131929 18003104 ~ 18004864 (+)
G194602 NA non-coding upstream 315483 17761856 ~ 17821310 (+)
G194595 NA non-coding upstream 439285 17697174 ~ 17697508 (+)
G194700 NA non-coding downstream 41239 18184911 ~ 18220247 (+)
G194705 NA non-coding downstream 79692 18223364 ~ 18269367 (+)
G194741 NA non-coding downstream 180539 18324211 ~ 18324588 (+)
G194768 NA non-coding downstream 389002 18532674 ~ 18619885 (+)
G194935 NA non-coding downstream 769101 18912773 ~ 18918471 (+)
hpse2 hpse2,LOC102781816 other upstream 20949 18059344 ~ 18115844 (+)
slc25a16 slc25a16 other upstream 642443 17485368 ~ 17494350 (+)
G194325 LOC102785938,LOC102201169,LOC100696907,LOC101467692,LOC101074032 other upstream 1245843 16889400 ~ 16890950 (+)
hif1an hif1an other upstream 1477716 16649868 ~ 16659077 (+)
trmt2b trmt2b other upstream 1511696 16620024 ~ 16625097 (+)
wu:fc17b08 LOC103355820 other downstream 7059 18150731 ~ 18197092 (+)
prdm8 LOC104947267,LOC103357713 other downstream 537285 18680957 ~ 18684337 (+)
G194908 NA other downstream 700758 18844430 ~ 18850903 (+)
G195036 LOC103369008,LOC106520712 other downstream 982548 19126220 ~ 19131941 (+)
mcph1 mcph1,LOC102776803 other downstream 1024314 19167986 ~ 19200005 (+)

Expression


Co-expression Network