G203482


Basic Information

Item Value
gene id G203482
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 17055131 ~ 17097020 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU275665
tttttttctgtgttttttttttttttttctgctaccctctcttctctttccccTGACTGCATGCGTGACACCTGCCTGCCTCCCGTCCCTTCAGCCCCCTTGTCCGACCATCCCACCACCCCCCTGTGTGCCTGCTCCCCTGCTCTTCCCAACCCACAAGGACCTTCACAGGATGGAGCTGCGCAGTCCCAGCTACAACTAcagcaacaataacaaaacCGGGACCAAGGACCAGAAGGAGGAAAtactctgcagctcctctgctATTTTTTTTGCCTCGTCTTTAGAGAGAAAGGATGTATTTGATCCGAGCAAACTCTATTCTGCTTGTGCTACGGCAGTATTCTATAGGCATAGATAGACAGGAATTGAGCACAGCGGTCTAGAGTTTAAAAAGCGAGGGATTTTAAACGTAACAGTTAGCAGCTTTTCTGGATGTGAAAGTCTTGCATAATGGCAAAAAAGCTAAATTTCTCATCTTTTTGCTTTTTGCTATCCATCAGTATTTACTCTTTGCTAAATTATGTGTATGTAGTTATTAATCAGTGGATTGAGACTGTTATTTAGATCCTGTTTTCCAATCTGTACATGACTATGGTTACATGCACagagtgcagagagagagagagagaagaaagagagagagagagagagagagagagaggaacagtagagaagagatggagagtaggagggagggaaagacgAAAGGTAAGATAACGACACAGCTATACCAACTGTAATGAAGAACTGCTTGGTCTGATTAAACCATACCAAGCTCTTAACCAGGAACAGCGGAGGCAGTGCTATGGTGAGGATAAGGCATAGCGGCGCATCGCAGTGTGTACTCATAAATATCTAGTCGTCATCCTTTGTTTTGCTCTGAGGGGAAGATGGTCTGCAGGAATGGTAGCAGTCAGGTAGCTGGGCTGCTGCTCTCTTTATGGTGCAACAAAGGTAGCTTTGCTCGCTCGCTCTATCTCACTCCCTGTTTCTCTgtgctctcctctctctgtggtGCTTTTTAATGATGTTATGTGTATACAGAGAATGCCTTAATGGTGTGAATGCTGCTTTGATGGTCactacatgtatttttttttttcacattttgttgcTGGAAACCCTTTCTTGCACTTCCACAAACGCATGCATGCATTTACAAACTCTAAGCTGTTCAGTCAGAGGAATCACAATGTCATTGGCTTGtatcatgtactgtatgttttttttccctgaaTTATCTGTATAGAAAACCTGTTTTCAGGGAGAACGCATGCTGGTGTGGGATTAGCATGCAATGTACTTTGACGTGTGAAAGGACCGCATAGCCGCCTCTGAgcccacagagaggagagatcACAGGTGAGGAGAGAGGAATGAGGAAGTGAAACAGGCCTAGATTGACAAAATACAACATTAGGATGTACTTTTAAGAGAAAGTGACAACGTTTGGCAAATTGTATTCATGTTCAAAATTGCTGTAGAACGTCACTACAAAGGAGGGAAAGTGTTGCAAAAAGCGGGGTAAGTGACAGAGGAGAACAGGATATGATGATGAACTGAGAACATTTTGGGAAGTTTGGGTTTGAGCTCTTTGTGTTCACAGTGGACCTTGATTTAATTTCAATACAATTAAGGCACGCGGTGAATGCCAAGAGAGAGGCCACAGTCTTCGCTTACCTGAGAGACCAGCGTACAGCCGCTACAGGACAGGAGAGAGGTGCTGATACCTACACAGACGAATGTTCGCTACAATCCTATGAGAATAACAAACGACATTATTAGCCACAGAGAAGAAGCATTAGGCAAAGAGGTTACAGAGCCGTGACCTAAGGCATGTGCACAGATCAGTTAATGCAAGCCAGAGAAATCTAGGAGAGACATAGGAGTGCAATGAAATACACCAGACTCACTGGGTACCAGTCTAAGTGATATACTGGTTTCCATAATGACAGAACAGACAGAGCCGTAGGCAGCCTACCAGTGTCGGTTCTGTGGCCAAATGGACAGAGGGATCACACCAGGGGGATTTGCCATGTGGTGACAGAGGGCCACTTCAAAGGTCTGTGTGTTTACGCATGAGCGTACACTTGCCCTGTCTGAGAGGAAGATGGAAAAACAGGGTGAGAATGCTATAAGAGCACGATGTGCTGGTGTAGGGGAATTATTTCTATCATAAAAGGCAATAACCTCCTGAATCATTCTCATGCATGCagatttatttttgttcaaCTAAACATGATTCCATGACCATCCATACCCTGAAAATACAgctttgcactttttttttttattgaaattataaatgaaattaagtgtttttgttgtgggtTTCAATATCATgcctttgtttgtgttttttttctgcaaagaCGTCTCAATAAAGAAGTCATTTCATGGACTACATTTCTATTTGTACTATCTAGTGTTTCTTTTCAAAGTAAAAAGGCCCAAAGCACTTTATGTGATTTAAATAATGAGCTTTATTTCTACTCCTATAATCACAGAGCTGCATCAAATGATTCAAGCTGTAAATCGCTGTAGGCAATAGAGATGTGAGTTGACCTACATCTCAGATGATGGAAAcgaaacatgcacacaaaaaaattaaataaatgaaatagtg
>TU275667
agagcagagagggagagggagggaaagagagagagagagagagagagagagaggaacagtagagaagagatggagagtaggagggagggaaagacgAAAGGTAAGATAACGACACAGCTATACCAACTGTAATGAAGAACTGCTTGGTCTGATTAAACCATACCAAGCTCTTAACCAGGAACAGCGGAGGCAGTGCTATGGTGAGGATAAGGCATAGCGGCGCATCGCAGTGTGTACTCATAAATATCTAGTCGTCATCCTTTGTTTTGCTCTGAGGGGAAGATGGTCTGCAGGAATGGTAGCAGTCAGGTAGCTGGGCTGCTGCTCTCTTTATGGTGCAACAAAGGTAGCTTTGCTCGCTCGCTCTATCTCACTCCCTGTTTCTCTgtgctctcctctctctgtggtGCTTTTTAATGATGTTATGTGTATACAGAGAATGCCTTAATGGTGTGAATGCTGCTTTGATGGTCactacatgtatttttttttttcacattttgttgcTGGAAACCCTTTCTTGCACTTCCACAAACGCATGCATGCATTTACAAACTCTAAGCTGTTCAGTCAGAGGAATCACAATGTCATTGGCTTGtatcatgtactgtatgttttttttccctgaaTTATCTGTATAGAAAACCTGTTTTCAGGGAGAACGCATGCTGGTGTGGGATTAGCATGCAATGTACTTTGACGTGTGAAAGGACCGCATAGCCGCCTCTGAgcccacagagaggagagatcACAGGTGAGGAGAGAGGAATGAGGAAGTGAAACAGGCCTAGATTGACAAAATACAACATTAGGATGTACTTTTAAGAGAAAGTGACAACGTTTGGCAAATTGTATTCATGTTCAAAATTGCTGTAGAACGTCACTACAAAGGAGGGAAAGTGTTGCAAAAAGCGGGGTAAGTGACAGAGGAGAACAGGATATGATGATGAACTGAGAACATTTTGGGAAGTTTGGGTTTGAGCTCTTTGTGTTCACAGTGGACCTTGATTTAATTTCAATACAATTAAGGCACGCGGTGAATGCCAAGAGAGAGGCCACAGTCTTCGCTTACCTGAGAGACCAGCGTACAGCCGCTACAGGACAGGAGAGAGGTGCTGATACCTACACAGACGAATGTTCGCTACAATCCTATGAGAATAACAAACGACATTATTAGCCACAGAGAAGAAGCATTAGGCAAAGAGGTTACAGAGCCGTGACCTAAGGCATGTGCACAGATCAGTTAATGCAAGCCAGAGAAATCTAGGAGAGACATAGGAGTGCAATGAAATACACCAGACTCACTGGGTACCAGTCTAAGTGATATACTGGTTTCCATAATGACAGAACAGACAGAGCCGTAGGCAGCCTACCAGTGTCGGTTCTGTGGCCAAATGGACAGAGGGATCACACCAGGGGGATTTGCCATGTGGTGACAGAGGGCCACTTCAAAGGTCTGTGTGTTTACGCATGAGCGTACACTTGCCCTGTCTGAGAGGAAGATGGAAAAACAGGGTGAGAATGCTATAAGAGCACGATGTGCTGGTGTAGGGGAATTATTTCTATCATAAAAGGCAATAACCTCCTGAATCATTCTCATGCATGCagatttatttttgttcaaCTAAACATGATTCCATGACCATCCATACCCTGAAAATACAgctttgcactttttttttttattgaaattataaatgaaattaagtttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU275665 True 2629 lncRNA 0.42 2 17071234 17097020
TU275667 False 1720 lncRNA 0.44 3 17055131 17086516

Neighbor

gene id symbol gene type direction distance location
ctsl.1 LOC105927681,LOC107088057,LOC107080941 coding downstream 19140 17032622 ~ 17035991 (-)
LOC120549649 NA coding downstream 406029 16635945 ~ 16649102 (-)
luzp1 luzp1 coding downstream 430958 16573383 ~ 16624173 (-)
tmem30b LOC103376486,LOC104968041,LOC101077997,LOC106562615 coding downstream 499121 16551359 ~ 16556010 (-)
dync1h1 dync1h1 coding downstream 504509 16518559 ~ 16550622 (-)
rps6ka1 rps6ka2,rps6ka1,LOC102784271,LOC102207269,LOC101475486,LOC100692096,LOC102306499,LOC106533968 coding upstream 126946 17223966 ~ 17277457 (-)
cldn23l LOC103376466,LOC105418560 coding upstream 211196 17308216 ~ 17312871 (-)
grhl3 LOC103376465,LOC104946782 coding upstream 216235 17313255 ~ 17323361 (-)
dcdc2b NA coding upstream 324968 17421988 ~ 17433369 (-)
iqcc NA coding upstream 336913 17433933 ~ 17439051 (-)
G203427 NA non-coding downstream 45855 17009050 ~ 17009276 (-)
G203426 NA non-coding downstream 73429 16981414 ~ 16981702 (-)
G203425 NA non-coding downstream 94100 16960725 ~ 16961031 (-)
G203419 NA non-coding downstream 105531 16945979 ~ 16949600 (-)
G203420 LOC107392205,LOC103376478,LOC106520459 non-coding downstream 109684 16863919 ~ 16945447 (-)
G203499 NA non-coding upstream 51718 17148738 ~ 17232870 (-)
G203516 NA non-coding upstream 99033 17196053 ~ 17250216 (-)
LOC120548726 NA non-coding upstream 196189 17293209 ~ 17294364 (-)
G203610 NA non-coding upstream 299877 17396897 ~ 17399376 (-)
G203619 NA non-coding upstream 328380 17425400 ~ 17425759 (-)
vgll2b LOC103376476,LOC104940407,LOC104956959 other downstream 6149 17043909 ~ 17048982 (-)
G203208 NA other downstream 1373208 15679363 ~ 15681923 (-)
lbh lbh other downstream 1800425 15244596 ~ 15254706 (-)
lclat1 lclat1,LOC102789029 other downstream 1818109 15218265 ~ 15237022 (-)
crlf1a crlf1,LOC103364670,LOC104965953 other downstream 2608485 14429798 ~ 14446646 (-)
LOC120548841 begain other upstream 430507 17527527 ~ 17676304 (-)
ppp2r5ca ppp2r5c,LOC106937856,LOC102790868 other upstream 584583 17681603 ~ 17706379 (-)
znf292a znf292,LOC103355984,LOC100696383 other upstream 974464 18071484 ~ 18083774 (-)
LOC120549177 nt5e other upstream 1026119 18123139 ~ 18130408 (-)
G203836 NA other upstream 1085035 18182055 ~ 18184574 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G82045 NA non-coding CI01000013 null 7339729 ~ 7340751 (+)
rainbow trout (Oncorhynchus mykiss) G1944526 NA non-coding NC_048589.1 CM023243.3 6651309 ~ 6653996 (+)
tiger barb (Puntius tetrazona) G63065 NA non-coding NC_056706.1 CM032075.1 11523022 ~ 11523638 (-)
mexican tetra (Astyanax mexicanus) G79179 NA non-coding NC_035905.1 CM008308.1 10189740 ~ 10192215 (+)