epas1a (epas1,LOC102296554,LOC101473138,LOC102776775)


Basic Information

Item Value
gene id epas1a
gene name epas1,LOC102296554,LOC101473138,LOC102776775
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10748518 ~ 10754865 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787814.1
CAGTTTTGGAGGCCCTGTAGGTGATACACATgcagaggggagaggagacacTCGCTGTTGAAGTCATCTGTGCTGCGGAGGACCACTTGCCTTGTGACATTTGGCACCACTAATTGCCTCTCTGATTAATTAGACTACCTGTGATGGTGCAAATTGTAGCAGGGAGATaccctgctgtgctgtgaactCCTGCTGCCTTCCATCTCTTTTTGTGTCCTGAATCAACGTTCACCATGGCACCGGATAGAGACGCCTGTTGGACACGATGAAAGCCGACAAGGAGAAGAGAAGGATGATCAGCCGCGACGCAGCCAGAAGGAGACGACGGGTGGAGTCTGAGGTGTTTGCCGAATTGTCTCGCCTCCTGCCGCTCCAACAGTCTGTCCAAGATCACCTGGACAAGCCCTCAGTCATTCGCCTCACCCTCAGCTACATACGCATGCACACACTGCTCAAAGGGATTACTGGGAAAAAAGCAGAGGCCAGTCACGCAGTAAAATGTGAACAAGTAATGGAAAGTGGAGAGGAATGGCGAGGGTGTGACAGAGGACGTGACGATGAGGAGAAAAAAACTGATGATGTGGAGGCCTCGGAGGAGACAAACATGTTCCTGAGGATCCTGGAGGGATTTCTGATAGTCCTGTCCACTGAGGGAGACATGATCTACCTGTCTGACAACGTCAGCAAGTACATGGGCTTGACACagACTGAGCTGATGGGACACAATATTTTTGAGTTTACTCACCCTTGTGACCACGAAGAAATCAGAAATAACCTACGTCTaacagcagAAGAAGTTTGGTGCGGTGCAAAGAGGGACTTTGTCATGAGGATAAAAGGTGCTCTgacacacagaggaagaagcTCTAACCTCAAGTCAGCTACGTGGAAGGTTCTCCACTGTCAGGGCCGAGCAAAGGTGTGTGTCGCCCCATCTTCAGTTTCCTGCCTGCTGCTGACCTGCCAGCCTCtgcccctctcacacacacttctcagCACACACACCTTTACAAGCCAGCATAGCATGGACATGAGGTTCACTTACTGTGACCAGAGAATTACTCTGCTTTTAGGTTACAGTACCGAGGAGCTGCTGGGCCGTTCCATCTATGATCTCTGTCATACACTGGACACAAACTGTTTGACCAAAAACCATCTCAACTtgtgtttaaagagtcagtcagtcagtggtcagtacaGGATGCTGGTGAGAGGTGGAGGTTACGTCTGGGTGGAGAGTCACAGTGCCGTCATCCCCAGCGTCCGACCCTCCAAGTCCAGGCCTGGCGCCCACCAGCCACTCTGCATCCTCTGTGTTACCTATGTCCTCAGTGGAGTGGAGGAGCCGTCCCTGCAGCTCTCTTTGGACCAGACTGTCCACAGATATTTGAGATGAAACTTGAGTCTGGAGAACAGTCTGCAAAACCCTCATCCTCAAAGAAACAACAA
>XM_039787815.1
CAGTTTTGGAGGCCCTGTAGGTGATACACATgcagaggggagaggagacacTCGCTGTTGAAGTCATCTGTGCTGCGGAGGACCACTTGCCTTGTGACATTTGGCACCACTAATTGCCTCTCTGATTAATTAGACTACCTGTGATGGTGCAAATTGTAGCAGGGAGATaccctgctgtgctgtgaactCCTGCTGCCTTCCATCTCTTTTTGTGTCCTGAATCAACGTTCACCATGGCACCGGATAGAGACGCCTGTTGGACACGATGAAAGCCGACAAGGAGAAGAGAAGGATGATCAGCCGCGACGCAGCCAGAAGGAGACGACGGGTGGAGTCTGAGGTGTTTGCCGAATTGTCTCGCCTCCTGCCGCTCCAACAGTCTGTCCAAGATCACCTGGACAAGCCCTCAGTCATTCGCCTCACCCTCAGCTACATACGCATGCACACACTGCTCAAAGGGATTACTGGGAAAAAAGCAGAGGCCAGTCACGCAGTAAAATGTGAACAAGTAATGGAAAGTGGAGAGGAATGGCGAGGGTGTGACAGAGGACGTGACGATGAGGAGAAAAAAACTGATGATGTGGAGGCCTCGGAGGAGACAAACATGTTCCTGAGGATCCTGGAGGGATTTCTGATAGTCCTGTCCACTGAGGGAGACATGATCTACCTGTCTGACAACGTCAGCAAGTACATGGGCTTGACACagACTGAGCTGATGGGACACAATATTTTTGAGTTTACTCACCCTTGTGACCACGAAGAAATCAGAAATAACCTACGTCTaacagcagAAGTTTGGTGCGGTGCAAAGAGGGACTTTGTCATGAGGATAAAAGGTGCTCTgacacacagaggaagaagcTCTAACCTCAAGTCAGCTACGTGGAAGGTTCTCCACTGTCAGGGCCGAGCAAAGGTGTGTGTCGCCCCATCTTCAGTTTCCTGCCTGCTGCTGACCTGCCAGCCTCtgcccctctcacacacacttctcagCACACACACCTTTACAAGCCAGCATAGCATGGACATGAGGTTCACTTACTGTGACCAGAGAATTACTCTGCTTTTAGGTTACAGTACCGAGGAGCTGCTGGGCCGTTCCATCTATGATCTCTGTCATACACTGGACACAAACTGTTTGACCAAAAACCATCTCAACTtgtgtttaaagagtcagtcagtcagtggtcagtacaGGATGCTGGTGAGAGGTGGAGGTTACGTCTGGGTGGAGAGTCACAGTGCCGTCATCCCCAGCGTCCGACCCTCCAAGTCCAGGCCTGGCGCCCACCAGCCACTCTGCATCCTCTGTGTTACCTATGTCCTCAGTGGAGTGGAGGAGCCGTCCCTGCAGCTCTCTTTGGACCAGACTGTCCACAGATATTTGAGATGAAACTTGAGTCTGGAGAACAGTCTGCAAAACCCTCATCCTCAAAGAAACAACAA

Function

symbol description
epas1 Enables DNA binding activity; protein heterodimerization activity; and transcription coactivator binding activity. Contributes to sequence-specific DNA binding activity. Involved in cellular response to hypoxia; positive regulation of transcription by RNA polymerase II; and regulation of protein neddylation. Acts upstream of or within response to hypoxia. Part of transcription regulator complex. Implicated in familial erythrocytosis 4; lung non-small cell carcinoma; polycythemia; and pulmonary hypertension. Biomarker of osteoarthritis; pre-eclampsia; psoriasis; rheumatoid arthritis; and von Hippel-Lindau disease.

NR:

description
PREDICTED: endothelial PAS domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787814.1 True 1449 mRNA 0.51 9 10748518 10754865
XM_039787815.1 False 1446 mRNA 0.51 9 10748518 10754865

Neighbor

gene id symbol gene type direction distance location
glud1b LOC103370412,LOC104922307,LOC102786658,LOC102213526 coding downstream 9135 10721171 ~ 10739383 (-)
LOC120551205 LOC103371333,LOC102288843,LOC107387740,LOC107089041,LOC100705041,LOC101474026,LOC102207374,LOC108248045,LOC103381519,LOC101170226,LOC103145144,LOC103481524,LOC102233374 coding downstream 260216 10440861 ~ 10488302 (-)
LOC120551210 NA coding downstream 333516 10409609 ~ 10415002 (-)
LOC120551217 cdr2,LOC102780218 coding downstream 354250 10385377 ~ 10394268 (-)
trnal-uag_19 NA coding downstream 405920 10342517 ~ 10342598 (-)
six3b six3,LOC104922638,LOC103370415 coding upstream 47093 10801958 ~ 10803758 (-)
ppm1bb LOC107387759 coding upstream 61984 10816849 ~ 10825678 (-)
trnai-uau_4 NA coding upstream 101877 10856742 ~ 10856835 (-)
pigf pigf coding upstream 162579 10917444 ~ 10921581 (-)
fbxo11b LOC104923568,LOC104951039,LOC100709495 coding upstream 208030 10962895 ~ 10977051 (-)
G211508 ldb3 non-coding downstream 47250 10691058 ~ 10701268 (-)
G211497 myoz1,LOC103371330,LOC102783790,LOC107387747,LOC103381524 non-coding downstream 188099 10556202 ~ 10560419 (-)
G211464 polr3e non-coding downstream 380297 10367621 ~ 10368221 (-)
G211440 NA non-coding downstream 386615 10258142 ~ 10361903 (-)
LOC120551240 NA non-coding downstream 530814 10210532 ~ 10217704 (-)
LOC120550884 NA non-coding upstream 52448 10807313 ~ 10810371 (-)
G211521 NA non-coding upstream 56850 10811715 ~ 10813639 (-)
G211520 NA non-coding upstream 58919 10813784 ~ 10815518 (-)
G211544 NA non-coding upstream 147774 10902639 ~ 10907389 (-)
LOC120550776 NA non-coding upstream 180832 10935697 ~ 10937823 (-)
sec24c NA other downstream 187116 10500253 ~ 10561402 (-)
G211451 LOC104933891,LOC103372658,LOC104967452 other downstream 419110 10326667 ~ 10329408 (-)
LOC120551227 NA other downstream 576515 10169714 ~ 10172003 (-)
G211113 LOC104923420 other downstream 854105 9887314 ~ 9894413 (-)
G210928 LOC104945051 other downstream 2155454 8589241 ~ 8593064 (-)
prkcea prkce,LOC103370414 other upstream 187 10755052 ~ 10806087 (-)
mta3 mta3 other upstream 103534 10858399 ~ 10891991 (-)
gch2 LOC103145127,LOC101161367,LOC103373802,LOC107085523,LOC102790074 other upstream 171996 10926861 ~ 10931338 (-)
nrxn1a LOC103359661,LOC102307287,LOC101485300,LOC102791317,LOC102215553 other upstream 241452 10996317 ~ 11058611 (-)
LOC120551361 gpr26,LOC100699461 other upstream 1214879 11969744 ~ 11976539 (-)

Expression


Co-expression Network