LOC120550776


Basic Information

Item Value
gene id LOC120550776
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10935697 ~ 10937823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637786.1
GATCCTATTTGAACAGCATCCACAATCAAAGGCTTTATAGTGTGTGATGATATAGATGCTGGAAGGGAGTGTATCATTAAGGGAGTCTGTATCTACATGGGTGAAGATCCAGAAAACCTTGTGCAGCAATATGTGACGCCATCAACGAGGCCATTGAAGACACCACTGTTGGGATTTATGTTCTTAAAGAACATGCTTCAAGTGAGGAACCAGAGGACATCGGAATTGTCCTTGAAGACATCAAGGTGTTGCAAGATCTTGATAATGTAGCATTAGCTGTTGCTATGCTGTTTGGACTAATGTATGTCCTGAACTTCAGATACCATGCTGGCCTTTGTTATACCTTTTGAGGTAATCCAAAAGATTTTCATGGAACTTGATGGAGGGAAACTTTCCAACAAAGCACTTGCTCTAAAAAACAGGCTCTTCCAGTCAAAGGGTCAGAGAAACTGTGCCGTCAGCCAAACAGCGTAGTTGTCCCTAAAGGCATCATTGGTATGGCTATACCGTTTGGactagttttgtttgtttgaattaATTGGACAGGATTTGCATGGAACTGCATGGAAATAACCTTTTGCAAACAAAGCAAAAGTTAAAACAGGCTCTTTTAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637786.1 True 617 lncRNA 0.41 3 10935697 10937823

Neighbor

gene id symbol gene type direction distance location
pigf pigf coding downstream 14116 10917444 ~ 10921581 (-)
trnai-uau_4 NA coding downstream 78862 10856742 ~ 10856835 (-)
ppm1bb LOC107387759 coding downstream 110019 10816849 ~ 10825678 (-)
six3b six3,LOC104922638,LOC103370415 coding downstream 131939 10801958 ~ 10803758 (-)
epas1a epas1,LOC102296554,LOC101473138,LOC102776775 coding downstream 180832 10748518 ~ 10754865 (-)
fbxo11b LOC104923568,LOC104951039,LOC100709495 coding upstream 25072 10962895 ~ 10977051 (-)
fshr LOC102306780 coding upstream 41359 10979182 ~ 10990204 (-)
psme4b LOC103359659,LOC100710300 coding upstream 144786 11082609 ~ 11115848 (-)
entpd1 entpd1 coding upstream 209418 11147241 ~ 11172319 (-)
ptprea ptpre,LOC107387775,LOC103145115,LOC104941390,LOC103359937 coding upstream 245525 11183348 ~ 11241420 (-)
G211544 NA non-coding downstream 28308 10902639 ~ 10907389 (-)
G211520 NA non-coding downstream 120179 10813784 ~ 10815518 (-)
G211521 NA non-coding downstream 122058 10811715 ~ 10813639 (-)
LOC120550884 NA non-coding downstream 125326 10807313 ~ 10810371 (-)
G211508 ldb3 non-coding downstream 234429 10691058 ~ 10701268 (-)
G211569 NA non-coding upstream 140996 11078819 ~ 11079389 (-)
G211570 NA non-coding upstream 141638 11079461 ~ 11079986 (-)
LOC120550582 NA non-coding upstream 309215 11247038 ~ 11280166 (-)
G211592 NA non-coding upstream 312567 11250390 ~ 11251031 (-)
G211656 mmp21 non-coding upstream 648087 11585910 ~ 11586159 (-)
gch2 LOC103145127,LOC101161367,LOC103373802,LOC107085523,LOC102790074 other downstream 4359 10926861 ~ 10931338 (-)
mta3 mta3 other downstream 43706 10858399 ~ 10891991 (-)
prkcea prkce,LOC103370414 other downstream 129610 10755052 ~ 10806087 (-)
sec24c NA other downstream 374295 10500253 ~ 10561402 (-)
G211451 LOC104933891,LOC103372658,LOC104967452 other downstream 606289 10326667 ~ 10329408 (-)
nrxn1a LOC103359661,LOC102307287,LOC101485300,LOC102791317,LOC102215553 other upstream 58494 10996317 ~ 11058611 (-)
LOC120551361 gpr26,LOC100699461 other upstream 1031921 11969744 ~ 11976539 (-)
LOC120551786 zcchc24,LOC104929980,LOC104967378,LOC103369865,LOC101487194,LOC100699813 other upstream 1900027 12837850 ~ 12851133 (-)
LOC120550679 adk,LOC106959442,LOC103355368,LOC100702520,LOC101468113,LOC102794333,LOC102208066 other upstream 2287703 13225526 ~ 13331422 (-)
adam11 NA other upstream 3283970 14221793 ~ 14259786 (-)

Expression


Co-expression Network