LOC120559401


Basic Information

Item Value
gene id LOC120559401
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3491004 ~ 3493963 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU62770
GGCTGATCTTAAACCTGTCCTGGAAACCCTTAAATGCGCAACCACTATCATGTCTTCTGAGAAGACCGTGTCGATCTCCCACATCTACCCCATCACCTTCAGCATCATTAATAAGCACATGGCCATCGCTACCGATGACAGGCCTCGGGCAGCAGAGTTCAAGACCATGGTTCGACAGTCATTGAGTCAACGCATGGAGGTTGACTACAACGAACGC
>XM_039801097.1
ctatctatctatatggctatctgccacacggcgagtaaatgtttgtcTTCAGTCTAGGGATGTTAACCGATGACCGTTTGACCGGTGGTTGACCGTTTCAACGTTAACCGGTCAAAGTTATGTTaatcggttaaaaaaaaaaaagtgatctcTAAATTAGGCAATTATAGATATTGGAATAAACGCTACTACAGTTAGCCATCTCattccaatatttttttttctgtgaagtgAAATAATCCCTCACGCAAAATTTTTCATAATCGCCTGTTTTGTAaaccaataaaaacatttggcGCGAGGTCACACCGTTTGGGTTTGCGCTCACATGGTTTGCAAAAAGTAAATGCTACAGGCTAAAACACTGGAGGTTAGAGCAGAGCAGACGACATGAAGCGTGCAAAGAAAAGTACTGTGTGGGACCATTTCACCAAAAAGAATGACAAAGATGTGAGTTGCAACTTATGTGATACATTGCTGAAATATAGTGGCAGCACATCATCTATGATGTATCACCTGAAGACGCAACACCCGCAAGCCTCTTCGGATGAGAAAGGTAGCCAAAGCCAACCTACCGTGCCATCTATGCTAGCTGGTAGGAAATGTGACAAACAGCGCTCAGAAACGATTACCCAAAAGATATGCAGAATGGTTGAAAAAGACATGCTGCCCCTTGATTTTGTAAGCGGTGAGGGATTTCTAGAGCTTATAAAATTCCTTGAACCAAACTACACAGTCCCGTCTCGACAGACCATAACAACACACATTGAAGAGCGCTTTGTCAAGAAAAAAGATGAGCTCAAAGCGCGCCTGTATCGTGCCAGGTGTGTAGCCATCACGACGGACTGCTGGACAGCACTAACCACAGAGAGTAATGTGACAGTCACTTGCCACTGGATTGACAATGTCTGGCAGGTTAAATCAGCAGTACTCCTCACAAAAAgtatgccaggcagacacaccGCCGAAAACCTGGCTGCAACACTAAACGAAGCGGTAGAGGCCTGGGGAATGACCGGGAAAGTGGTCGCACACAAGCTCATCCAGTCCTGAAAAACTAGATGGAATTCGGTGTTCGACATGTTTGAGAGGCTTCTCGAACAGCGATGGGCAGTGACAGCCGTCTTGTCCGACCACACCGTCACTCACAAAGCTGCAGGATGCCAGAATTCTCGAGATCAAGGACGAATACTGGGCAATAATGGCTGATCTTAAACCTGTCCTGGAAACCCTTAAATGCGCAACCACTATCATGTCTTCTGAGAAGACCGTGTCGATCTCCCACATCTACCCCATCACCTTCAGCATCATTAATAAGCACATGGCCATCGCTACCGATGACAGGCCTCGGGCAGCAGAGTTCAAGACCATGGTTCGACAGTCATTGAGTCAACGCATGGAGGTTGACTACAACGAACGCTTGGTTACAATGCCAGCGATGATTGCCTCTGCCCTTGACCCTCGACATAAACACCTCCCGTTTTCATCAAGAGAAAAAACAAAGGCAGGGCTTGATAAACtcaaggaactctgtgctgacgTGGAGCATGCATCTATTGAGGAGGACATGGGTGAGGAAGAAGAGCCTGGTGCTGCAGGAGGAGATGATGATGTTGTTGCTGTGACAGCGGGTCCATCCAGCGGAGCCAGCCACAAGGAGAGTGCAATGAGTCTGCTTCTGGGAGATGATTACAGCGCAGCCGATGCTACGGATCCACAGTTGGAAGTGGATACGTATGTGAAAGATAGTCGCTCCTCACTAGAAAGCAATCCGCTTGATTGGTGGAGGGCAAACCAGACGCGCTTTCCCAGACTGGCAAGATTGGCGCAGCGCTACCTTTGCATCCCCGGGACTTCTGTTCCATCAGAGAGGGTTTTCTCCGCTGCGGGCCTTGTGGTTAATCGACTGCGTACCCGCTTGACCCCAGAGCACGTAGACATGCTTGTgttctttaataaaaataagtgACTGACTCGTAGTGGGTGTGTTGGGGCATAACCCTTGACACCTAAAAAAAGGTTATTAGGCGTCTTTTACGCATtcattaaagattttcattcatttttcgtCTATTTTTTAGGCCACAGTAGGCTATTCTCTATTTAACTTGTTTTTCGTTAATTTATTTTCCGAGAATAACTAATGGCCAAATcgttttatgttttaataattAGGGGGCAGCCTAACCCTAAACACCTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62770 False 217 lncRNA 0.50 2 3491786 3492760
XM_039801097.1 True 2202 mRNA 0.46 2 3491004 3493963

Neighbor

gene id symbol gene type direction distance location
LOC120559410 NA coding downstream 31934 3458427 ~ 3459070 (-)
LOC120559390 NA coding downstream 64683 3383690 ~ 3426321 (-)
LOC120559411 NA coding downstream 151284 3331769 ~ 3339720 (-)
LOC120559400 NA coding downstream 237953 3251882 ~ 3253051 (-)
LOC120558537 NA coding downstream 271221 2859280 ~ 3219783 (-)
lrrc38a LOC103362254,LOC104932799,LOC101069713,LOC101473207 coding upstream 40116 3534079 ~ 3553937 (-)
LOC120559443 LOC103362253,LOC101473498 coding upstream 70546 3564509 ~ 3628773 (-)
trappc6b trappc6b coding upstream 241536 3735499 ~ 3745613 (-)
foxp3b NA coding upstream 277090 3771053 ~ 3809905 (-)
LOC120559452 suv39h1,LOC102791492 coding upstream 386347 3880310 ~ 3909770 (-)
LOC120559427 NA non-coding downstream 40816 3447209 ~ 3450188 (-)
G46856 NA non-coding downstream 332432 3157691 ~ 3158572 (-)
LOC120559426 NA non-coding downstream 361151 3121212 ~ 3129853 (-)
G46803 NA non-coding downstream 419604 3070176 ~ 3071400 (-)
LOC120559428 NA non-coding downstream 431550 3056573 ~ 3059454 (-)
G46816 NA non-coding upstream 22740 3516703 ~ 3517741 (-)
G46920 NA non-coding upstream 24474 3518437 ~ 3518669 (-)
G46979 NA non-coding upstream 210058 3704021 ~ 3704389 (-)
G46995 NA non-coding upstream 336796 3830759 ~ 3831182 (-)
G46999 NA non-coding upstream 349185 3843148 ~ 3843663 (-)
G46817 NA other downstream 205081 3283041 ~ 3285923 (-)
G46698 NA other downstream 1143500 2346505 ~ 2347504 (-)
LOC120559407 NA other downstream 1155303 2329654 ~ 2335701 (-)
rps21 rps21 other downstream 2245776 1236385 ~ 1245228 (-)
G46199 NA other downstream 2508893 976808 ~ 982111 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other upstream 440548 3934511 ~ 3950171 (-)
G47058 NA other upstream 461063 3955026 ~ 3955529 (-)
G47059 LOC102202574 other upstream 461641 3955604 ~ 3956382 (-)
dedd dedd,LOC103374682 other upstream 1097484 4591447 ~ 4621836 (-)
G47252 NA other upstream 1236538 4730501 ~ 4731141 (-)

Expression


Co-expression Network