RNA id: XM_039801097.1


Basic Information

Item Value
RNA id XM_039801097.1
length 2202
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120559401
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3491004 ~ 3493963 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctatctatctatatggctatctgccacacggcgagtaaatgtttgtcTTCAGTCTAGGGATGTTAACCGATGACCGTTTGACCGGTGGTTGACCGTTTCAACGTTAACCGGTCAAAGTTATGTTaatcggttaaaaaaaaaaaagtgatctcTAAATTAGGCAATTATAGATATTGGAATAAACGCTACTACAGTTAGCCATCTCattccaatatttttttttctgtgaagtgAAATAATCCCTCACGCAAAATTTTTCATAATCGCCTGTTTTGTAaaccaataaaaacatttggcGCGAGGTCACACCGTTTGGGTTTGCGCTCACATGGTTTGCAAAAAGTAAATGCTACAGGCTAAAACACTGGAGGTTAGAGCAGAGCAGACGACATGAAGCGTGCAAAGAAAAGTACTGTGTGGGACCATTTCACCAAAAAGAATGACAAAGATGTGAGTTGCAACTTATGTGATACATTGCTGAAATATAGTGGCAGCACATCATCTATGATGTATCACCTGAAGACGCAACACCCGCAAGCCTCTTCGGATGAGAAAGGTAGCCAAAGCCAACCTACCGTGCCATCTATGCTAGCTGGTAGGAAATGTGACAAACAGCGCTCAGAAACGATTACCCAAAAGATATGCAGAATGGTTGAAAAAGACATGCTGCCCCTTGATTTTGTAAGCGGTGAGGGATTTCTAGAGCTTATAAAATTCCTTGAACCAAACTACACAGTCCCGTCTCGACAGACCATAACAACACACATTGAAGAGCGCTTTGTCAAGAAAAAAGATGAGCTCAAAGCGCGCCTGTATCGTGCCAGGTGTGTAGCCATCACGACGGACTGCTGGACAGCACTAACCACAGAGAGTAATGTGACAGTCACTTGCCACTGGATTGACAATGTCTGGCAGGTTAAATCAGCAGTACTCCTCACAAAAAgtatgccaggcagacacaccGCCGAAAACCTGGCTGCAACACTAAACGAAGCGGTAGAGGCCTGGGGAATGACCGGGAAAGTGGTCGCACACAAGCTCATCCAGTCCTGAAAAACTAGATGGAATTCGGTGTTCGACATGTTTGAGAGGCTTCTCGAACAGCGATGGGCAGTGACAGCCGTCTTGTCCGACCACACCGTCACTCACAAAGCTGCAGGATGCCAGAATTCTCGAGATCAAGGACGAATACTGGGCAATAATGGCTGATCTTAAACCTGTCCTGGAAACCCTTAAATGCGCAACCACTATCATGTCTTCTGAGAAGACCGTGTCGATCTCCCACATCTACCCCATCACCTTCAGCATCATTAATAAGCACATGGCCATCGCTACCGATGACAGGCCTCGGGCAGCAGAGTTCAAGACCATGGTTCGACAGTCATTGAGTCAACGCATGGAGGTTGACTACAACGAACGCTTGGTTACAATGCCAGCGATGATTGCCTCTGCCCTTGACCCTCGACATAAACACCTCCCGTTTTCATCAAGAGAAAAAACAAAGGCAGGGCTTGATAAACtcaaggaactctgtgctgacgTGGAGCATGCATCTATTGAGGAGGACATGGGTGAGGAAGAAGAGCCTGGTGCTGCAGGAGGAGATGATGATGTTGTTGCTGTGACAGCGGGTCCATCCAGCGGAGCCAGCCACAAGGAGAGTGCAATGAGTCTGCTTCTGGGAGATGATTACAGCGCAGCCGATGCTACGGATCCACAGTTGGAAGTGGATACGTATGTGAAAGATAGTCGCTCCTCACTAGAAAGCAATCCGCTTGATTGGTGGAGGGCAAACCAGACGCGCTTTCCCAGACTGGCAAGATTGGCGCAGCGCTACCTTTGCATCCCCGGGACTTCTGTTCCATCAGAGAGGGTTTTCTCCGCTGCGGGCCTTGTGGTTAATCGACTGCGTACCCGCTTGACCCCAGAGCACGTAGACATGCTTGTgttctttaataaaaataagtgACTGACTCGTAGTGGGTGTGTTGGGGCATAACCCTTGACACCTAAAAAAAGGTTATTAGGCGTCTTTTACGCATtcattaaagattttcattcatttttcgtCTATTTTTTAGGCCACAGTAGGCTATTCTCTATTTAACTTGTTTTTCGTTAATTTATTTTCCGAGAATAACTAATGGCCAAATcgttttatgttttaataattAGGGGGCAGCCTAACCCTAAACACCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639268.1 lncRNA downstream 40816 3447209 ~ 3450188 (-) True LOC120559427
TU62705 lncRNA downstream 332432 3157691 ~ 3158572 (-) True G46856
XR_005639267.1 lncRNA downstream 361151 3121212 ~ 3129853 (-) True LOC120559426
XR_005639266.1 lncRNA downstream 364388 3121212 ~ 3126616 (-) False LOC120559426
TU62649 lncRNA downstream 419604 3070176 ~ 3071400 (-) True G46803
TU62664 lncRNA upstream 22740 3516703 ~ 3517741 (-) True G46816
TU62775 lncRNA upstream 24474 3518437 ~ 3518669 (-) True G46920
TU62853 lncRNA upstream 210058 3704021 ~ 3704389 (-) True G46979
TU62872 lncRNA upstream 336796 3830759 ~ 3831182 (-) True G46995
TU62876 lncRNA upstream 349185 3843148 ~ 3843663 (-) True G46999
XM_039801111.1 mRNA downstream 31934 3458427 ~ 3459070 (-) True LOC120559410
XM_039801079.1 mRNA downstream 64683 3403151 ~ 3426321 (-) True LOC120559390
XM_039801082.1 mRNA downstream 64687 3383690 ~ 3426317 (-) False LOC120559390
XM_039801081.1 mRNA downstream 86045 3403151 ~ 3404959 (-) False LOC120559390
XM_039801112.1 mRNA downstream 151284 3331769 ~ 3339720 (-) True LOC120559411
XM_039801121.1 mRNA upstream 40116 3534079 ~ 3553937 (-) True lrrc38a
XM_039801123.1 mRNA upstream 70546 3564509 ~ 3628773 (-) False LOC120559443
XM_039801124.1 mRNA upstream 70546 3564509 ~ 3628773 (-) False LOC120559443
XM_039801122.1 mRNA upstream 70546 3564509 ~ 3628773 (-) True LOC120559443
XM_039801125.1 mRNA upstream 70546 3564509 ~ 3615785 (-) False LOC120559443
TU62665 other downstream 205081 3283041 ~ 3285923 (-) True G46817
unassigned_transcript_223 other downstream 546080 2944853 ~ 2944924 (-) True trnaq-cug_3
unassigned_transcript_222 other downstream 546677 2944256 ~ 2944327 (-) True trnaq-cug_2
TU62526 other downstream 1143500 2346505 ~ 2347504 (-) True G46698
XR_005639247.1 other downstream 1155303 2334724 ~ 2335701 (-) False LOC120559407
TU62955 other upstream 461063 3955026 ~ 3955529 (-) True G47058
TU62956 other upstream 461641 3955604 ~ 3956382 (-) True G47059
TU63179 other upstream 1236538 4730501 ~ 4731141 (-) True G47252
TU63181 other upstream 1238833 4732796 ~ 4733285 (-) True G47254
TU63619 other upstream 3202482 6696445 ~ 6721729 (-) True G47624

Expression Profile