prickle3 (prickle3,LOC102790576)


Basic Information

Item Value
gene id prickle3
gene name prickle3,LOC102790576
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12415603 ~ 12439909 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65695
AGGAGTCCGGGGCAATCTGGAGGGGACATCCATCATGTAGTTTGTTCAACACAGGCTGCGTGACTTAAAATTCAAGACCTCGGTGTTTCTTCCCTCCGTTTGTTCGTCTGAAAAcgcatttttgtgtttttaacatCTAACCGACACCATGTTTCTGCGCGGATCTAAAAAACGACGGTCGAGCCGCTCGcaggaggaagaggacccGGACAGAGGGCAGCCCTGTCTGCACTGTGGAGACCAGTGCCCCGGCTTCCGTGTCCATGGCTGGAGGAAGATCTGTGTACACTGCAAGTGTGTGCGAGAGGAGCATGCCGTGCGCTCGGTGCCAGGCCAGCTGGAAAAGATGATGACGAAGCTGGTGTCGGACTTCCAGAGACACTCCATCTCCGACGACGACTCGGGCTGTGCCTCCGAGGAGTACGCATGGGTCCCACCTGGGCTCAAGCCCGAACAGTATTTCAGCTGCTTGCCAGAGGACAGGGTGCCTTATGTGAACAGTCCAGGGGAAAGATACCGAATCAAACAACTGCTGCACCAGCTTCCAACCCACGACAGTGAGTCCCAGTACTGTAACTCTCTGAacgaggaggagaagaaggagttGCGTTTGTTCAGTCagcagaggaaaagagaaagccTGGGCAGAGGCGTCGTCCGGCTCTTCCCAGTAACTATGACGGGAGCCATTTGCCAACAGtgtggcaggCAGATCTGCGGTGGAGACATAGCGGTGTTTGCCAGTCGGGCCGGACACAGCAGCTGTTGGCACCCTCAGTGTTTCCAGTGTTCCACCTGCAGTGAGCTCCTGGTCGATCTGATCTACTTCTTTCAGGAGGGACAGATCTACTGCGGCCGGCACCACGCTGAGAGGCTCAAGCCCCGCTGCCAGGCCTGCGATGA
>XM_039802008.1
ATACTTGGGCTGGAAATTGTCTTCTATCAGATTACCACTAGATGGAAGCAGATTGCTACTCATCTGAAATTAATTGCTAATGTAAAGGTCACTCTGTCCCATCAGCCAGGATTAAGAGTTAATAAGTAATTGCAAGAACATCAACATAGCTATGGTGTTTGCTCCAGTCTCTCATCAGTTTGATGGTGTTTAGATGTTATCAGGAATTATATCTTTTTACACACTCTGCCAGGATTTGTACTGACCTGCAGCATGCATCTGTGATGTGTCTAATCTCATTTGAAATGTTTCTATTTCAGACAGTTTGCATGCTGTCCCCCtctttcattttgagattacaTTGCGTTTGCGAAAATCCTTTCCTATTTTGCTCTCCTCTGTGCTGCTGCCTTTCAGTTGCAATGACCATTACAGTACACACTAGGCCCGCGTCATTTTAAAGACCTACAGTGGAATGATAATCCTTTGTTTGGGCTCATACTGACTTATTTTTAAACTAATTCCctatgttgttgttgctgctgctgctgttgctgtggCAGCCCGACTGCAATAataactccccccccccaaacacgtGTTCATATTTGCTCGTCtaaatatttatttagaaatatgtattaaaCCGACTCCTCCCATGCCCTGAATGTTTTCCCGATTTAACTATTAGAACCAGACTCTGCAGATAATACATAAAGACTAAACATGGTATAAATCAGAAAGTGTGAGGGATTTCTAACACAGAGTCGAGGGAGAAGGATTTGTATGTACAGCGGTTAACTTCTTGTAGCCTAGGTGAAATAAATGGCAAACTTTGGGACAGTTAACGCGGCCTGTGTTCAGGTTTATGGACAGGGGAGGTAAAGTTGGAGCTCTTCGTCAAGTTAGCCAGGTACAGTCTGTCAGGATGGCTGTTAAGCGCCTAGGCCTTCAATATAAAAGCAAGGATGTTATCCGTTTGAATTAAAAGAGTTTGCCAGTAACTATCTTGACCATTAAGATGGTgttatttgtatttatacaaaatgtaattGCTTTTAGTATAGGATTTACTTTGTCTCTGCTTACGAAATGccaaatatataattaataagtGTTTTACTTTGAAAGGTCAGCCCGAAGTCACATTTTTCAGTTAGGCTAGCTTGTCAGTTACCAAAGTAGCTAAGGGTTCAGGCGGAAGGAGGAGTCCGGGGCAATCTGGAGGGGACATCCATCATGTAGTTTGTTCAACACAGGCTGCGTGACTTAAAATTCAAGACCTCGGTGTTTCTTCCCTCCGTTTGTTCGTCTGAAAAcgcatttttgtgtttttaacatCTAACCGACACCATGTTTCTGCGCGGATCTAAAAAACGACGGTCGAGCCGCTCGcaggaggaagaggacccGGACAGAGGGCAGCCCTGTCTGCACTGTGGAGACCAGTGCCCCGGCTTCCGTGTCCATGGCTGGAGGAAGATCTGTGTACACTGCAAGTGTGTGCGAGAGGAGCATGCCGTGCGCTCGGTGCCAGGCCAGCTGGAAAAGATGATGACGAAGCTGGTGTCGGACTTCCAGAGACACTCCATCTCCGACGACGACTCGGGCTGTGCCTCCGAGGAGTACGCATGGGTCCCACCTGGGCTCAAGCCCGAACAGGTATACCAGTATTTCAGCTGCTTGCCAGAGGACAGGGTGCCTTATGTGAACAGTCCAGGGGAAAGATACCGAATCAAACAACTGCTGCACCAGCTTCCAACCCACGACAGTGAGTCCCAGTACTGTAACTCTCTGAacgaggaggagaagaaggagttGCGTTTGTTCAGTCagcagaggaaaagagaaagccTGGGCAGAGGCGTCGTCCGGCTCTTCCCAGTAACTATGACGGGAGCCATTTGCCAACAGtgtggcaggCAGATCTGCGGTGGAGACATAGCGGTGTTTGCCAGTCGGGCCGGACACAGCAGCTGTTGGCACCCTCAGTGTTTCCAGTGTTCCACCTGCAGTGAGCTCCTGGTCGATCTGATCTACTTCTTTCAGGAGGGACAGATCTACTGCGGCCGGCACCACGCTGAGAGGCTCAAGCCCCGCTGCCAGGCCTGCGATGAGGTGACTGTCTCACCGAGATCCCCAACCTGTCTCATAAACACTCCTCAACAttttttttttgttgttttttgctgcGCTAAgcgttttaattttttttttttgcgtcagCGTTACATCATGAGAGAGAGTCGACCATACTGCTGCTCCTGCTACGAGTCCATGTACGCAGAGTACTGCGATACCTGTGGAGAAAACATAGGTATCGATCAGGGCCAGATGACATATGAGGGTCAGCACTGGCACGCCGTGGAGTCGTGTTTCTGCTGCGCCCGCTGTCAACTGCCTCTGCTGGGGCGCCCTTTCCTCCCTCGAGGGGGGCTCATCTTCTGCTCCAGGGCCTGTTCTCTGGGCGAGGACCCCAATAACTCCGACTCGTGTGACTCGGCGCTGCCGAGCAAACCTCAGCACAGACGCTGTGACACAGCAGAGAAACCCCAGCAGCCGCAGTGCGGTTCTCCACTGCAGCCACAAGAGGGCACCAACCCTCCTATAACTCTTGGAAAAGACTGCATTCATACTGCAGTGGAAAACAGAGGTGTCCACTGCACTGCTCCGGTTCAAAACGGACTTCCTTTACCCAGTGGTCATCCTCATCCAAGAGGCTCGTACTCGCCTCTTCCCCACATCCATCTAGGAAATGGCTTAGGTCCATCTTGGCCCAGCGACCTTCCACATTACAGTTTACTGCCAGGGGACTCTGGTATTAAACCTCCTGTCGGGGATCTCCAGTTCCAGCGAGAGCGGAATGGAAATACTGGACTAACTGGTCTTAATTCAAGAGGAACCTCTACTGCTAAAGACTGTAGGAACTGGGTGGAAAGGACGAATCAAGTAATGCAAGTGTTTCCTCCTCAGAAAAACTCACACATCATTTCACCTGAGTCGCCTCCCCTCTTGCCCAACAACCCATCCGTCCTGCCACCTCCTCTGCCCGTTAAGTCCCGTGACTTAATGCCCCAAGACTCACCTCCACCAAACCTCCCCCAACCAGTGGACAGACCCGCTGATTCTCCACCCCCGCTGTCTCGCAGTGGCACAGCTCGGGTCAGCTTCAGAGAACCAATCAGCAGCAGCTACTCCGTCGATGAGGACGAGGATGAAGACGAGAATGAGGAGGAGCTGCGAGAGGGCGTGGAGAACCAGCAGGAGGAAGATGAGGTGGAGGGAGGTTTCGGAAGCAGGTTGCATCTACAGAAAGGCATCCCACCTCAAATGGATCTGCTGGATGGATCCTCCTATCACCAGCGGAGTCTGCGGCGAGGGTGGGGCCATTGCCGTATCCCCTCCGACCCTGCTCTCCACCCGGGCCCGGAGAGGCGCTCCCGACGCTCGCAGCCCGACCGGCCTCGGCTGGACACCCTGGACTggagaggggagaaagagagggatagCCAGGGCTCCGCCAACGGCTCCTCACTGACCCTCAAGCTGAGCCAGTACAAACACGAAGACTGCTCTACGTGCTCTTCATCCTCAGACTCGGAGGAAGAGGGCTTCTTCCTGGGACAGCCCATACCTCTCCCCCCGCAGCTCCGAAAGCAGCAACCTGAGGAGGgcaaagacagagagggagaagaggagagggaggtgcAGAGAGACTGGGGACTGAGAGGCAGCATAAGGCGGAGAAGAGCTCACAGCCTTGGTGCAAAGGACAAAGATAAAAACTGTGCTATCTCCTAACACCTAACATCAAAACACAGCATGTTACTTTCTAAATTATGGAAGAGAACTAATGGCCCTTCATTACTCTAGTATTCAAGCTGTTTTTCTGTTGGTAATGTAGATCCAACACACGTGCAGACTTTTCAGAAAGGTGAACCACAGCCATTGTTCCAAAGGAAGCACAATAAACCGCAGAAAAGTCATTACCTTTTACTTTACGATATTGACTTCTCATTGGTTGACCTTTTGAGATGTTACAGTGTGAGTATGTGGTTAGTGATGAATGTGGAGTGATTGTTGGTAACATTTATGTTTGGATTCTATAGAGATGACTCACTCCTGTGTCCGTGACCCTGAAGTGTAATGTTACCGCTTCTTAACATCGCCATCATTTACATATGCAAACTTGCAGTAGCACGTATGACCAGGAACAGACAGCTCATTCCTCCATTATGGTTTGTAAAAGGAATATTAAATATATGTTATTTTTAACTCTACCGTAACTACTTTTTTCTGTGCTCTTATGTGCAATTTGTATATGGCTGTAATATATTAGTTATGAATACTAATGGGCAAATTTATGGAATGGAGTATGACCAGCCTTGGCAGTTTTATGATTATCAAAGTATCACACAAAGGAGAATTTGAGTAAATTTTGGAGGTTAAATTTGCTGCGTGTGTTTAAACAAAATACTTCAAAATTTGTATATGTTCATGTCtttaatcaaattatttttatatatttggtGTAAGTCGCTgttctttcttatttttttaggTAAAAGGAAGAGATTATAATTTCCGTTTCTTTTATTGTGTCGGGCAACTTTA

Function

symbol description
prickle3 Predicted to enable zinc ion binding activity. Human ortholog(s) of this gene implicated in Leber hereditary optic neuropathy. Orthologous to human PRICKLE3 (prickle planar cell polarity protein 3).

NR:

description
prickle-like protein 2 isoform X2

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
TU65695 False 903 TUCP 0.56 6 12419786 12438725
XM_039802008.1 True 4593 mRNA 0.48 11 12415603 12439909

Neighbor

gene id symbol gene type direction distance location
fam110a NA coding downstream 231 12412221 ~ 12415372 (-)
mfsd2al2 LOC102788240,LOC103355362,LOC102198151 coding downstream 5455 12392255 ~ 12410148 (-)
samd10a LOC105935172,LOC103139076,LOC103354595,LOC107095944 coding downstream 83611 12323485 ~ 12331992 (-)
uckl1a LOC103355333,LOC101079427,LOC103139074,LOC101476695,LOC102196708,LOC102308715,LOC103385400,LOC101173865 coding downstream 92262 12306258 ~ 12323341 (-)
nkain5 LOC103354565,LOC101477820 coding downstream 135566 12271487 ~ 12280037 (-)
plp2 LOC106572444 coding upstream 108 12440017 ~ 12449668 (-)
sypb syp,LOC104932998 coding upstream 12578 12452487 ~ 12468003 (-)
LOC120559913 cacna1f coding upstream 28791 12468700 ~ 12493767 (-)
timm17b timm17b,LOC102791711 coding upstream 54096 12494005 ~ 12499465 (-)
gpkow gpkow,LOC103467951 coding upstream 64492 12504401 ~ 12511572 (-)
G49183 snph non-coding downstream 28379 12383502 ~ 12387224 (-)
G49180 NA non-coding downstream 34818 12376979 ~ 12380785 (-)
G49179 NA non-coding downstream 38627 12376288 ~ 12376976 (-)
G49177 LOC108232018 non-coding downstream 40041 12375337 ~ 12375562 (-)
G49178 NA non-coding downstream 42295 12371821 ~ 12373308 (-)
LOC120558434 kdm5c,LOC101072313 non-coding upstream 164971 12604880 ~ 12661242 (-)
G49307 NA non-coding upstream 260520 12700429 ~ 12704105 (-)
G49372 NA non-coding upstream 328911 12768820 ~ 12771419 (-)
G49374 nt5dc2,LOC102799881 non-coding upstream 336008 12775917 ~ 12779320 (-)
G49384 NA non-coding upstream 397611 12837520 ~ 12839132 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 23926 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 192575 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 246394 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 287178 12126886 ~ 12128425 (-)
peds1 LOC104919928,LOC103354371 other downstream 436568 11959379 ~ 11979035 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 484549 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 811077 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 868451 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 966876 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 1307494 13747403 ~ 13753866 (-)

Expression


Co-expression Network