rimkla (rimkla)


Basic Information

Item Value
gene id rimkla
gene name rimkla
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25066824 ~ 25082881 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799808.1
TCGCATAATTTCGCACCATTATCACATGGGAGTGTTTTCTTTCCACTCAGCCGACACAGTTGTCCTTGGATGGCACTGTCAAAATACAAGTTATTGGAAGAATAAAAGCCTCTCAGTCTTTAGGAATTGATGCAgaatggaagaaaagaaaatgaggaTTGGTAGTGGTTCTGGTTTGTGATGACCTTGTTTCCTTTCCTGCCACTTCGGCATGGAGACAGCGCTGTCGGTTTTCGCCAAACCTCCTCGCACCGTCTGGTCTGAACCGGTTCGGGATGCGCGCGATCTCGTGCGCACTGCAGACTCCACGCACTGATTCACAGCACTCCGCGCCCTCCGTTTGAGAGCGTCCTCATTGGTTGGGGTGTTCGGGGCCCGCCCACACCTTCCGCGTGCTGTTTGGACAATGAGGAAGTTCCCGAGTTGGGATTGGTTAATGCCCCTCCAAAACTTGTATTTTGGGGCAGGACCCTGCGCACGGTCACGCGGAGAATGGAGTTGTAAACGAAGCGCGTGCACATTTCAGCACCAAAAACTCGTGGACAGCAGCCAAACGGAGGAGAGAGTGTAGTCGTCGTGGGCTAGCTTATTGTAATAAACCGGCGACATTGCGGTTAGCGACGCCATACAGCCGCTGCGATCGCGGGAAAACTTCATTGGTAGTTTTGAGTCGGCAAGTAAACGATATAAAGCGCACAGCTTGTGCTTTGTTCGCTCCGGCGGGCAGAGAGCTGGATATTGGTTGAAAGAGACACGTTTCTGCGGGTAAATATACCGTTATTTTCTGCTCGCGTGTCTCGGATTTGCGCGGTCTGGGTTCAACTAACTGCACCCTGGGGAGACTAAATGGCTGCAAATGAAGGGAAACAAAGGTGATAACGAAGATTATTCATCCTAGCCGGTTCGGTCCAGACAACGGTTGAGCCGTGGTCCTGTTTTTAGCCACATCACAACCTGCTCGTGCTGCTAGCCGCCGAGGCCATTGTTTGAGCATCTGTGTGCCATTGCTCTGCCGCCCGAACCCCGGATCACTCGCTGCCACCACACACCTGCCGCCTGTGTGTTTTCacggatttcatttttttttaactttttgaatCCAAGCATACACAATGTGTTCTCGGGTTTGGTTTGTGACCGACCGGCGTATCAGCCAGGAGTATCCTCAGGTTCAGATCCTCCGGGCATTGAAGGAGCGCTGCGCCGACGAGGATGTTGAATTCCGCTCTCTTCTCATGGATCAAATCGTGCTAACGATCAGCGAGGGACAATTAGGTCTACGAGTGGAGCAGGAATTGGTGACATCTTATCCACAGGTGGTGGTGGTACGGGTGCCCACACCCTGGGTGCAGTCAGATAGTGACATCACTGTGCTGCGCCACTTGGAGAAGATGGGCTGTCGGCTAATCAACCGTCCCCAGGCCATACTCAACTGTGTCAACAAGTTCTGGACCTTTCAGGAGCTGGCAGGCCATGGGGTGCCTCTTCCTGACACCTTCTCCTACGGAGGGCATGACAACTTCCGTAAGATGATTGACGAGGCGGAGCCACTGGGCTACCCTGTAGTGGTGAAAAATTCACGTGGCCACAGAGGCAAGGCTGTGTTCCTGGCACGGGACAAACACCATCTGACAGACCTGTGCCACTTGATCCGTCACGATACCCCCTACCTGTTTCAGGAGTATGTCAAGGAGTCGCATGGCCGTGATGTCCGGGTGGTCCTGGTGGGCGGCCGTTTCATTGGCTCAATGCTACGCTGTTCCACTGATGGTCGCATGCAGAGCAACTGCTCCTTGGGTGGCGTAGGTATGATGTGCCCACTGAGCGAGCAGGGAAAGCAGCTGGCCATAGAGGTGTCGAACATCCTCGGCATGGATGTGTGTGGCATTGACCTTCTGCAGCTCAATGATGGCTCATTTGTGGTCTGCGAGGCCAATGCCAATGTGGGCTTCATCGCCTTCGACCAGGTCTGTGGCATGGATGTGGCAGGCATTGTTGCCGACTACGCCCTCTCGCTGCTCCCCAGCCGCCTCACCCGTAAGATGTCCCTGCTGTCCGTCGTGTCGAGCACCAGCGAGACCAGCAGCGAGCCTGAGGTGTGCCCTGTGCCCACTGGCGGTGGCTCACTGCCCGAGGCTGTCTGCAACATGAGCGTGGGATCCACTTCCAGCGAGAGTGACCCGGAGCTGGCTGAGCCCTCCGAGTCCTCGCCCTGCCAGTCCACAGCCCCCACCCTGCCCGATCTCGCTGACCTCCCCGATCCAACCTACAACTTCAACACCCTTCTCGCCAATGAGATCAAACTATTGACTGAGTAAGATTCAAGCAGcttcatgcacacacaaacaccaccaaTACATATTGAAAATacgcatacacactcacacacacacacctgtacgcATGGCAACAGACAttccttttaaaaacacatattgATCCAAAAATATGAATACATCGGATGTTAATGCAAAAGAAGAGCGGAGAAAAACAGAACACACATACAGGCGCAAATGCCAAAACATGAGTCTTCTCCTACTAACTCCCTTCAAAAATAACAAAGATCTGAGGCTGCTCCCCTGACTCTCCTTGCTTTGCACCTCTACTCCCAAACTACAAACCCCACTATCCAAACTTAGCGTACACTGCAGCATGTTGGCAAGAGTGGGATATAGTACATAAGATAACTGCCTATTTGGCCTCTCCTAGTTTCTATTTTGCAAAATAGTGAGGGTGAAGGTGACTGTTTTCTGGGGTGGGTGTGGGATTCCCATAAAGGCAAACACCTGCCATATTTGTATCCTTACTATACCATATTATCTAAAGGAGAATCTACAGCATGTTGTCATAAAAAGGGGTTTCCTTCTGAGACTGAATTAAGGTTTGGTGGATTGGAGGCaaaattaagtgttttttttaagtgataaGCTCCTTGGGAGAGGAATACATCCTTATGCTAGGCACATTATACTGACAGTTCCAATGTAGCAATGTAGTGCTCCTGTCAAGGACACAGAACAGGATGGGGACCAGCAGCAACTGGAGATGGAGAAATGTAATGTCAAATGTACTGCTATTCATAATAACTGAAAGGAGACATGCATTCACTACATGACAATATGTTGTAAATCCAACTATAACATAATGTATACGCAATGTTTTAACTCTTCTATACAGTCAGTGCAATCCATAAAATCCCACTAATACAAAAATGTAGCCGGAGCTGCTTCATTGAGTGAATAAGAGGCTGACGCTGTGCTGTCAGAACCATTTTCCTTTCATGCTTAAATAGGAAAATTATCAACTCAGATTATAAACCCACAGCACCAGAAAATCATCCTTGGTGCTAACACGGTGTCCATTAATTTATTCTCTGTTTACTGTGAATGAAGCAGCTAATGTAAATGTAAGAAAAACTGCCCTAACCTGTGCATGGTAGTGGAAATAACAAATAGCAGTTCTGTTTGAGAGTCACAACCtggattttaaaaatgaattaagTGCCATGACtcaatttttaattttacacTCCTAGACAGCTTGTTTGATTAGCCTTACCAGCAACACTGCTGCATTTTAAAATTCATAATGTCTAGCACTTTATGATAAACCAATGCattacttttttctctcttgctcagataacatatttaaaaaacatgagAGTGTGAAAGCTGTGTCTACACCTGCGAACAAAATATACCTCAAAACAGTGACTTCTCACTGCCACAGGATGACATATTCAAACATACAGAACATATCAGCCAGGATCCTTGTGGTTTTCAAATGGCCCCTGATATACCAGGTGTTCCTTCCCTTTATGTCTAGGAGCTAAAAAGATAGTtgtgtattatttttattccttttttttttttttttagatgtttttgtaaatatttaggTAGCGAATTAACTTCAGTGCATACTAGTATACAGCTAATGAAACTGGAACGGCTGACATAACTGCCAACATTGACATTTTTCATAAGCTATTGTAGACCAATTTGTTTGTACAGACCTGCAATATTGAAAGGTTGAAACTAAAGTTTGGTGCTAACATTTATGGATTTGGTTAGATGTGTTTTCTCAGTCATATGATTTGTAGATTATACTTTTGTTGTTTTCACCTTGTTTTTTGATAACGTGAAATGAAGGATCCTAACTCACAACATATGTTGGCATGatgtacaaataaaaaatgggaACTATTTTTTTGCAGTCTCTTTGAACagaatgtcactttttttgtttcttaaacaaagaaagaaaaacaaaaatccagggATTTCAGTGGCCAAGAGCATATTGCTTGCGGTTTTTGTTCCTGTAGATTTACCTCCTGTACGCCTTCTGAAGTAACTATCAACATAGAGGTAGGGTATGCTAGGTTAAATGCCATTCATTTAAGGGGAATTTCAGTATTTTCCAagctggaccctattttcccatgcattcgtatctaagtgactaatgtgaacaaaaatctttgaaattggtccggTATTGAGCGAAAACGGTGTAACCGGCAGCCgcgaaccgggctgcaatgtaaccctataggGCAAATGCGCACTGCTAGTTTCCGTCCACTGAAAGTGCCGTTTTTGTCACTGACATTATACGTGTCTGACTACATTTTGGGAAGATGGTGAAGTCTCGTTCTGAAATCTCACAAAGTGACTTGTAGGAAGACCCGTGGATGTTTACTGTGTGGAAGGCGAGTGGGGAGAGAGGAGTTCTGGGGAGTTTGTTGTTTTGGAGTACAGACAGCGTAGCTTTGTGTTATCTAAAATATTTTCAATTGCGCATTTCCGAAATTTTGCCAAAGAAATGTCGAGCTACACAGCTTTTCATAGACATTAACCTTTGGATACGGACAGGCTGAAGTTGAGGCTAGTTTTGCTACAGCTACTAAATTAATCCTAACACTGCGCCTTGCAGACCGTCCGGTCTGCAGTGACCATTTTGAGCGTGGATGACTACTGGCAgccaaagaggagaagaaatcCTATACCAAAGCACAAGAAAAATGCTGTTGAGCTACCAGGCTTAGCGGAGGTAAGCTAATGCTATTAGCTAAAGTTACTGTGTTGACCTGGCATCAGTAAGTTACACACGAAAGCATGGCAGGATAAGGGTAACTTTTCCATCTTCCCATAATGTAGTCAGACACTTTGAATAACAATCTGTGCCTGTCATtgacaaaaacagcactttcagTGGACAGAAATTAACGGTGTGCATTTGCCCTATAGAATTACATTGTAGCCCAGTTagcggctgccggttacagtgttctctctcaatactggaccaaagattagtcacttagacacaaatgcatgggaaaatagggtcaaCCTTGAGAAATACTGAAATTCCCCTTTTTAAGAATAATTTACAGCTCTGATCAAAAGCACAAACATAAACCCTAAGTAGTTCTACGTAGTGACGTCAGTGTTTTTAGACTCATAACCCTTTCTGTTGAAGACAACTCAGGGAAGCAGCCTGGATCTCACCCCTGACACCCAATGGCACTATACACCCATCCTAGCCTAGAGACATGTCAAAAACACTACACATACCTACAGGcagatgaaaagataaacaatgaaatgaaacaCAGTGAAAAAAAGGTTGTAAACTACAGTATAAGACAATGTGGTGTATACCATGGTTAACATGCACTTTTTTCCTTGCTTGTTTTATATTGTtccttgttttcttcctaatttatgctattttttaaagaaaaaagtggTTTGCGCACTAATATTGTCTCAATAAAGTGAAACCGCTGTGAAGcttga

Function

symbol description
rimkla Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity and citrate-L-glutamate ligase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Orthologous to several human genes including RIMKLB (ribosomal modification protein rimK like family member B).

NR:

description
PREDICTED: N-acetylaspartylglutamate synthase A

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18311 RIMKLA, NAAGS-II; N-acetylaspartylglutamate/N-acetylaspartylglutamylglutamate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799808.1 True 5810 mRNA 0.45 5 25066824 25082881

Neighbor

gene id symbol gene type direction distance location
ccdc30 LOC103353009 coding downstream 12571 25034635 ~ 25054253 (-)
si:ch211-112c15.8 NA coding downstream 45977 25008278 ~ 25020847 (-)
ttc34 ttc34 coding downstream 60689 24999878 ~ 25006135 (-)
LOC120559745 LOC103353003,LOC104920211,LOC100699381,LOC101479901 coding downstream 76464 24969944 ~ 24990360 (-)
LOC120559637 LOC103353002 coding downstream 108660 24947761 ~ 24958164 (-)
LOC120559015 LOC103353028 coding upstream 346526 25429407 ~ 25433698 (-)
LOC120558818 LOC104944186 coding upstream 351018 25433899 ~ 25438353 (-)
LOC120558853 LOC104939814 coding upstream 645679 25728560 ~ 25738561 (-)
wrap73 wrap73 coding upstream 665695 25748576 ~ 25768482 (-)
LOC120559223 gpr153,LOC102782986 coding upstream 788577 25871458 ~ 25906502 (-)
G52936 alas2,LOC106524166 non-coding downstream 67177 24998118 ~ 24999647 (-)
G52935 alas2,LOC108236847,LOC106524166 non-coding downstream 70004 24990983 ~ 24996820 (-)
G52893 NA non-coding downstream 106641 24959791 ~ 24960183 (-)
G52883 NA non-coding downstream 121509 24920716 ~ 24945315 (-)
LOC120558684 NA non-coding upstream 1926 25084807 ~ 25085797 (-)
G52961 NA non-coding upstream 16224 25099105 ~ 25166197 (-)
G53004 LOC104953341 non-coding upstream 342463 25425344 ~ 25428943 (-)
G53006 NA non-coding upstream 360267 25443148 ~ 25446575 (-)
G53027 NA non-coding upstream 447972 25530853 ~ 25533053 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other downstream 281819 24750431 ~ 24785005 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other downstream 727368 24335149 ~ 24339456 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 1747140 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 1847924 23214098 ~ 23218900 (-)
G52226 NA other downstream 2536116 22529606 ~ 22530708 (-)
acot7 acot7,LOC102782704 other upstream 827874 25910755 ~ 25972322 (-)
emc1 NA other upstream 1054117 26136998 ~ 26147245 (-)
G53196 NA other upstream 1130112 26212993 ~ 26214882 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other upstream 1309131 26392012 ~ 26402310 (-)
dcp1a dcp1a other upstream 1563933 26646814 ~ 26658321 (-)

Expression


Co-expression Network