G53027


Basic Information

Item Value
gene id G53027
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25530853 ~ 25533053 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU70878
ATTATTGATTGGCATTCCCTGGAGGAGGAACCAGTCTGCTGCAGTCCGAGGGCCCCGCGACAAAACAAAGTTGCTGTAGAGCGATATATTCTCGGCGGCAtcgacaaaagaaaagaaaaaaaaggggggaaaaaatctgCATTAAAATATTGCTTTTTCTGTCTAAATTCACATGTGGTCGTCTCCGTTTGTAGGAGAGTGAAAGAGTGCGCTCGGCTCGCTGGGAGCTCTGCAGCAGCGAGCAGCGGAGCCACAGCGCCCACTATTTCAAAAGCCGGGAATATTATTTCACAAGACTTGGAacggctctctctctctaaaaaaaaaaaaaaaagttactatCCATTTCGACAACTTTCTTGGTAACTTTCTGGAAAACGTATCTGCGCCTCCGCTGAACCTCCCGACACCCGAACAGAGCAAATGACAAGACCGAGCTCAGATTTGGACGGCGATGTTTATCTCTGAGCCTTTAGAGGAGTTTAATCAACTGAAAAGCACCAGCGGCGATTCTCATCACACATAAAAACTTTCTGACACTGAGAACCGACGAAGCCAAGACCGCAGCACGCAGAGAAACGAGGCTGAGCAGCCGGAGCGGGACACATTTTCTAGCAGAAAAGTTAACTCTGGACAAAGAGTCGCCCCCTCCTCTCTTAATGATATGACAAATGACAAGGACATGGACATCTATACACAGCCACGAGTTTGGAGCCGGCGGCTGAAAGCGATAAGAAGCAGAAAAAAGAAGACCTACTTTTGGCCAGTTTTCTAGCCCTCGCCTTGGATCTCATCTTGTCGGCTTGTAGATTCCTCTCGTCGTCCTCCGTGAGCCcagaagcagcaacaacacTATCTTCATCTCACCAGCATTGTCAGTTTGGACACCTTCGCACATGCGCACAGGCCATTCAATCTGACACCCTCGCCGGGGCCAAAAAACTTTCCAATgtattcatcatcatcacttttttttgtcctATCGTCTCCCCTTTAGATCACTTATctcttcccctcctcctcttcctcctcctcctgctctctccTCACCATCTCACCTACCCTCCCTCCCCCATTGCCATCCCCTTACCCTCGCCCCCCTCCTCAACCCCCCCCCATCCCATTCATGCCAGCACCTCATTGGATTTTTACCTCTTTAACAGCGACAACTTGGTTTTCTCCAACCGGCGGTGGACACAGTGAGGACAAGCAGCGGCCAGCAGCTGTTTGACGCATGCATGGAGCCTCCACCAGAGTCCGTACCGGGgagaaaggttttttttttttttttcctccaatgTTCACATTTGTAACAATCGTATCTGCAGCAGTTGTTTTCTTGGAGAAATGTTTGTGGTCACTCTTAGCGCCCACTGTGACGCGTGAAGTCATCTGAACGAAGGTGGATAGACCACGGCACACTTTCTCTCCGTAAGTATACGGCTTTCGCCTTGCACCGGTTTGTTAGTTTGTTTGCATCCAGCAGTCTGATGAAGCCTGACAGACTGCAaggtcttttttcttttcttcttttttacgaAAAATGTGTATTCAAACACAAACATcggacaagtagcctacataatTATGCAACATTATAATATGTACAATGtacaatatgtatatatacaagtgtttttttaacttttatgttTAATATCAAAGTTGCAATTCAGtctatttattgtatttatcaGACAAATGGGGAGTATTTTATTATACAATGTAATAGTCTTATTGTAACTATTTTGCATGATTTGAAAtctgtatatgtaaatatattatagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70878 True 1788 lncRNA 0.45 2 25530853 25533053

Neighbor

gene id symbol gene type direction distance location
LOC120558818 LOC104944186 coding downstream 92500 25433899 ~ 25438353 (-)
LOC120559015 LOC103353028 coding downstream 97155 25429407 ~ 25433698 (-)
rimkla rimkla coding downstream 447972 25066824 ~ 25082881 (-)
ccdc30 LOC103353009 coding downstream 476600 25034635 ~ 25054253 (-)
si:ch211-112c15.8 NA coding downstream 510006 25008278 ~ 25020847 (-)
LOC120558853 LOC104939814 coding upstream 195507 25728560 ~ 25738561 (-)
wrap73 wrap73 coding upstream 215523 25748576 ~ 25768482 (-)
LOC120559223 gpr153,LOC102782986 coding upstream 338405 25871458 ~ 25906502 (-)
LOC120559306 hes2,LOC103362587 coding upstream 440013 25973066 ~ 25974347 (-)
hes2.1 hes2,LOC104926436,LOC103362588 coding upstream 452628 25985681 ~ 25987238 (-)
G53006 NA non-coding downstream 84278 25443148 ~ 25446575 (-)
G53004 LOC104953341 non-coding downstream 101910 25425344 ~ 25428943 (-)
G52961 NA non-coding downstream 364656 25099105 ~ 25166197 (-)
LOC120558684 NA non-coding downstream 445056 25084807 ~ 25085797 (-)
G52936 alas2,LOC106524166 non-coding downstream 531206 24998118 ~ 24999647 (-)
G53052 NA non-coding upstream 266372 25799425 ~ 25801177 (-)
LOC120559222 NA non-coding upstream 299379 25832432 ~ 25867522 (-)
G53095 espn non-coding upstream 502532 26035585 ~ 26048413 (-)
G53161 NA non-coding upstream 601208 26134261 ~ 26136831 (-)
G53162 NA non-coding upstream 652374 26185427 ~ 26212141 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other downstream 745848 24750431 ~ 24785005 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other downstream 1191397 24335149 ~ 24339456 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 2211169 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 2311953 23214098 ~ 23218900 (-)
G52226 NA other downstream 3000145 22529606 ~ 22530708 (-)
acot7 acot7,LOC102782704 other upstream 377702 25910755 ~ 25972322 (-)
emc1 NA other upstream 603945 26136998 ~ 26147245 (-)
G53196 NA other upstream 679940 26212993 ~ 26214882 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other upstream 858959 26392012 ~ 26402310 (-)
dcp1a dcp1a other upstream 1113761 26646814 ~ 26658321 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036733 NA non-coding NC_007119.7 CM002892.2 48092795 ~ 48158753 (-)
grasscarp (Ctenopharyngodon idella) G216254 NA non-coding CI01000050 null 6003702 ~ 6007084 (-)
mexican tetra (Astyanax mexicanus) G181144 NA non-coding NC_035916.1 CM008319.1 34551475 ~ 34624427 (+)