hes2.1 (hes2,LOC104926436,LOC103362588)


Basic Information

Item Value
gene id hes2.1
gene name hes2,LOC104926436,LOC103362588
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25985681 ~ 25987238 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800768.1
CATCATCACGAACCTCCGCATACCAGCGCTAGACGCAGGGTCCCAACGGGACCAGATGGTCCAGACAGAGCTCCGCTCATCTCCCAAAGGCATCGCCCCCCTGTGTCAAACCCCCAGCACAATGGCTTGTGTTCCCTCCCCTCTGACGCGCCGGATCCACATAAATAGAAGGCTCTCCAGCTCTGCGGCACACTTCAGCTCAGCCGCTTCAAGCGCAAGTATATCCCCTCAAAAAAACACCGCAACaagcagaaaacaaaatgagTCCCAGCATCACTACTGAGGCCAACCAGCTTCTCCCTGCCAGGTCCACCGTTGCCCAGAGAAAACAAGCCAACGAACTGAGAAAGACTCTTAAACCCTTGCTGGAGAAGAGAAGACGTGCTCGTATCAACGACAGTCTCAGTCATTTGAAAAGCCTGATTCTTCCTCTGGTTGGCAAAGACAACGCACGCTACTCCAAGCTGGAGAAAGCTGACATTCTGGAAATGACAGTCCGTTTCCTCAGAGACCTTCCTTCCACTCCAGTCAAAGATTCCGCAGAGAGTTACAGAGAAGGCTACAAAGCCTGCCTCCAGCGCGTCTCCACTCTGCTTCCCAAAACGAGCCTGGACCAAGACGCGTGTCAGCGGGTGAACGAATTTGTCCAGCAGTCCACGTCCGCCACCGTCACCCCAACCTGCCTGAACTGCTGCGCTCAGAGCTCCAGGACTCTCCCTCAGATCCATAAGAGACTCCTGAGCCTCAAATCCAGCTTCAGCTCCAGACTGGAGAGCCAGTCCCGCAGCAGCGGCGGCGCAGTGGCTCCCAGCCGAGCGCAGTCCGGCCCGCAGGCTGTCGGAGCTGCCATGTGGAGACCTTGGTAGATTAGATGGACATTGATCTCATGCgtgttatttattttgtgaTGTTATTTATGCTATTTGTATTCCAATGACCGTAATCTTAGCGATTAAGAATTGTTGGAGTTGCTGTACAATAATTTAATTCAGCATTTGGCTCCTTTACAGTTTCATGCCAGAGAGCAAACGAGCACAGATAGGAAAAGAAACGGAAGTCTATGagctttttttaaaatgcaatcTTCTTTGGGGTTTCAAAGATATGGGTTGTAGACAACACTTTTGTAAAACCCCAAGGGTTATTTTGTTGGAAGTTTGCACGATATGGACTTAAAAGTATTTTGGTCTGTGCAAAAGAATAGTCTGTAAACACTATGTGTTAAATAGGATTATATAGTATTCACTGACGTTATGTAGcctaagaaaaaaaatgttttatgactcttcaaatgttttgtgACACTTGTAATGTTTTGTCATTGACAACAAACTTTTCAATAA

Function

symbol description
hes2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: transcription factor HES-2-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800768.1 True 1343 mRNA 0.48 3 25985681 25987238

Neighbor

gene id symbol gene type direction distance location
LOC120559306 hes2,LOC103362587 coding downstream 11334 25973066 ~ 25974347 (-)
LOC120559223 gpr153,LOC102782986 coding downstream 79179 25871458 ~ 25906502 (-)
wrap73 wrap73 coding downstream 217199 25748576 ~ 25768482 (-)
LOC120558853 LOC104939814 coding downstream 247120 25728560 ~ 25738561 (-)
LOC120558818 LOC104944186 coding downstream 547328 25433899 ~ 25438353 (-)
ybx1 ybx1 coding upstream 84347 26071585 ~ 26076648 (-)
ppih ppih coding upstream 91574 26078812 ~ 26095577 (-)
taf10 taf10 coding upstream 109087 26096325 ~ 26101396 (-)
LOC120559533 NA coding upstream 122329 26109567 ~ 26119334 (-)
LOC120558512 LOC108236765 coding upstream 237891 26225129 ~ 26226447 (-)
LOC120559222 NA non-coding downstream 118159 25832432 ~ 25867522 (-)
G53052 NA non-coding downstream 184504 25799425 ~ 25801177 (-)
G53027 NA non-coding downstream 452628 25530853 ~ 25533053 (-)
G53006 NA non-coding downstream 539106 25443148 ~ 25446575 (-)
G53004 LOC104953341 non-coding downstream 556738 25425344 ~ 25428943 (-)
G53095 espn non-coding upstream 48347 26035585 ~ 26048413 (-)
G53161 NA non-coding upstream 147023 26134261 ~ 26136831 (-)
G53162 NA non-coding upstream 198189 26185427 ~ 26212141 (-)
G53179 NA non-coding upstream 198618 26185856 ~ 26189714 (-)
G53185 NA non-coding upstream 207260 26194498 ~ 26195171 (-)
acot7 acot7,LOC102782704 other downstream 13359 25910755 ~ 25972322 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other downstream 1200676 24750431 ~ 24785005 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other downstream 1646225 24335149 ~ 24339456 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 2665997 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 2766781 23214098 ~ 23218900 (-)
emc1 NA other upstream 149760 26136998 ~ 26147245 (-)
G53196 NA other upstream 225755 26212993 ~ 26214882 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other upstream 404774 26392012 ~ 26402310 (-)
dcp1a dcp1a other upstream 659576 26646814 ~ 26658321 (-)
selenok selenok other upstream 805214 26792452 ~ 26795090 (-)

Expression


Co-expression Network