selenok (selenok)


Basic Information

Item Value
gene id selenok
gene name selenok
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26792452 ~ 26795090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71391
aagaagaacgacACAACGGACACAACCGACACGGAAGTGCGCAAGTTGTAAACACAGCTGTGAATCTTTGGCTGTTGACGTTACTTTCACAAAGATGGTGTACGTGTCCAACGGTCAGGTCCTGGACAGCAGGTCCCAGTCACCATGGCGACTGTCCTTACTAGTCGATCTCTTCTGGGGGGCAGTGGAATTCATCGGCCTGTTTTTTAAATCAATTATTCACCCCGACTTGACAAAGGATGGAAACTATGGTTCGTCACGCTTTACTGATGGCAGAGGTCCTCCAGGTCCCCCTGGTGGCAGACGACGGATGGGAAGAGTAAACCACGGTGCAGGTCCCAGCGCTCCACCGATGggtggaggaggatgaggaagGTAAATGCCTACACTGAATGTGTAGGCGTGGGGCCTGGCACAGTGTTCATTTGCTAAGAACCTGAAGAACAATGGTGATGTCACAGTGCTGAAGCCCCTCTTCATCGGCTGCCGCTGCCATGAGCAGTTTTTTGATGCCTTTCTGGGAATTCCTACACGTAGGGGCCAGAATGGCTGATACAGCAGCTATCCacatctttttctctttcagccCCAACCCTTTCCTTTCACACCAGTCTCTTAGAGATGTGTGTTACTGACGTCTCGATTTTGATCATCCCTTCTGGGAATAATaaagtttgtctttgttttgcatTTGTCTGTCTGATCAATAAATGTGCGATGTT
>XM_039801738.1
ggtggcggtaatgTTGTTTTGCCAACCGCCAATAAAccacgaagaagaagaagaagaagaagaagaagaacgacACAACGGACACAACCGACACGGAAGTGCGCGTTGTAAACACAGCTGTGAATCTTTGGCTGTTGACGTTACTTTCACAAAGATGGTGTACGTGTCCAACGGTCAGGTCCTGGACAGCAGGTCCCAGTCACCATGGCGACTGTCCTTACTAGTCGATCTCTTCTGGGGGGCAGTGGAATTCATCGGCCTGTTTTTTAAATCAATTATTCACCCCGACTTGACAAAGGATGGAAACTATGGTTCGTCACGCTTTACTGATGGCAGAGGTCCTCCAGGTCCCCCTGGTGGCAGACGACGGATGGGAAGAGTAAACCACGGTGCAGGTCCCAGCGCTCCACCGATGggtggaggaggatga

Function

symbol description
selenok Predicted to be involved in calcium ion transport; endoplasmic reticulum calcium ion homeostasis; and protein palmitoylation. Predicted to act upstream of or within ion transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human SELENOK (selenoprotein K).

NR:

description
selenoprotein K

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71391 True 722 TUCP 0.49 5 26792452 26795028
XM_039801738.1 False 430 mRNA 0.52 5 26793234 26795090

Neighbor

gene id symbol gene type direction distance location
chdh chdh coding downstream 16647 26765089 ~ 26775805 (-)
LOC120559562 tkt coding downstream 147872 26627296 ~ 26644580 (-)
LOC120559020 LOC104941497 coding downstream 307668 26476362 ~ 26484784 (-)
si:dkey-11f4.7 LOC104941497,LOC103384507,LOC102293335 coding downstream 316377 26444951 ~ 26476075 (-)
LOC120559754 prelid3b,LOC102797510,LOC100690371 coding downstream 349807 26435683 ~ 26442645 (-)
sema3b sema3b coding upstream 194710 26989800 ~ 27076351 (-)
zgc:136971 NA coding upstream 351413 27146503 ~ 27156987 (-)
amt amt coding upstream 376583 27171673 ~ 27183156 (-)
LOC120559022 NA coding upstream 398192 27193282 ~ 27202420 (-)
LOC120559934 NA coding upstream 403622 27198712 ~ 27198827 (-)
G53395 cacna1d non-coding downstream 39413 26750010 ~ 26753039 (-)
G53382 LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371 non-coding downstream 128767 26620041 ~ 26663685 (-)
G53366 NA non-coding downstream 197574 26591029 ~ 26594878 (-)
G53359 LOC104943886 non-coding downstream 217173 26574152 ~ 26575279 (-)
LOC120559888 NA non-coding downstream 221480 26570591 ~ 26570972 (-)
G53398 NA non-coding upstream 1401 26796491 ~ 26797207 (-)
LOC120559916 NA non-coding upstream 2315 26797405 ~ 26801154 (-)
LOC120559521 NA non-coding upstream 21927 26817017 ~ 26818570 (-)
LOC120558995 NA non-coding upstream 418442 27213532 ~ 27215246 (-)
G53540 NA non-coding upstream 458518 27253608 ~ 27255158 (-)
dcp1a dcp1a other downstream 134131 26646814 ~ 26658321 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other downstream 390142 26392012 ~ 26402310 (-)
G53196 NA other downstream 577570 26212993 ~ 26214882 (-)
emc1 NA other downstream 645207 26136998 ~ 26147245 (-)
acot7 acot7,LOC102782704 other downstream 820130 25910755 ~ 25972322 (-)
G53444 sema3g other upstream 166257 26961347 ~ 26966023 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other upstream 362498 27157588 ~ 27171232 (-)
hyal3 LOC103359396 other upstream 393958 27189048 ~ 27199911 (-)
xpc xpc other upstream 849693 27644783 ~ 27660646 (-)
LOC120558759 NA other upstream 1050174 27845264 ~ 27930515 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location