ifrd2 (ifrd2,LOC104928016,LOC104966933)


Basic Information

Item Value
gene id ifrd2
gene name ifrd2,LOC104928016,LOC104966933
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27157588 ~ 27171232 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71557
GTGGACTTGGTGACAACAGCGTGCTCAGAACTCCGTCCCAAACAATTTAGAAAATGCTTAATATCTCAACCTGGTATTAGATATAGATTGCCGGGGGACAATCATAGATAATACATTGTGAAAACCGTTGAATACAGTGACTTTTTCGCCACCGGACAACTCTTTATTCCAAGATTAAAGAAAGCGGGGAGTTGCTGAACCACCAGGTGGTTGCTGCTCGTAAAGGACGCTAACCAACGTTAGCCAAAGTGTCAACAAAAGTGTGAGAGAAGGTGTAATTTTGGAAGCTGCTTTTTACCCAGCTGTCAAGATAAACCACATAGACCATTCagccctctgctgctgctgcctagACACCAACTGTCAAATCTGTGAGGAGCGGATATAACACGTTACCTGACAGTTGGGCTGAAAGTAggctaactttagctagctaacctCAGCTAGCTTTGTTGTGAACTGTGGATCAGAGCGCTACTCAAAATGCCACGGAGTAAAAAGGGGAAACGTGGCTCCAGCAAGCCGGgtATTAAAAATGGGATGAAAGGAGAGTCGGGGGCCAGTGATGATGAGCTGACGTCTGATATTCTCAGCCACTGTAGCAGTGCCAGTGAAAGTACCTCTGTGTTGGAAGAGGGCACAGGAGGGGAGCAGGTGGATGAGCAGACTGCCCAGGAGGAAACTGAAGATAAACTCAAGCAGTGTATAGACAACCTGATGGATAAGAGcACTAAGACGCGTCTAGCAGGTCTCGAGTCGTTGCGACAGGCCTTCTGCTCCAGAGTGCTCTACGACTTCCTGACTGAGAGACGCCTCACTATCAGCGACTGCCTGGAAAGAAGCCTTAAAAAAGGCAGCGTGGAGGAGCAGGCAGCAGCGGCCACACTCTTCACCCTGCTCTGTATCCAGCTGGGGGTGG
>TU71558
GTGGACTTGGTGACAACAGCGTGCTCAGAACTCCGTCCCAAACAATTTAGAAAATGCTTAATATCTCAACCTGGTATTAGATATAGATTGCCGGGGGACAATCATAGATAATACATTGTGAAAACCGTTGAATACAGTGACTTTTTCGCCACCGGACAACTCTTTATTCCAAGATTAAAGAAAGCGGGGAGTTGCTGAACCACCAGGTGGTTGCTGCTCGTAAAGGACGCTAACCAACGTTAGCCAAAGTGTCAACAAAAGTGTGAGAGAAGGTGTAATTTTGGAAGCTGCTTTTTACCCAGCTGTCAAGATAAACCACATAGACCATTCagccctctgctgctgctgcctagACACCAACTGTCAAATCTGTGAGGAGCGGATATAACACGTTACCTGACAGTTGGGCTGAAAGTAggctaactttagctagctaacctCAGCTAGCTTTGTTGTGAACTGTGGATCAGAGCGCTACTCAAAATGCCACGGAGTAAAAAGGGGAAACGTGGCTCCAGCAAGCCGGGCTCTCTACGTCAGGAGGTtcttcagctgcagctgtcGGCTAAAGCCTCACTGAAAGgtATTAAAAATGGGATGAAAGGAGAGTCGGGGGCCAGTGATGATGAGCTGACGTCTGATATTCTCAGCCACTGTAGCAGTGCCAGTGAAAGTACCTCTGTGTTGGAAGAGGGCACAGGAGGGGAGCAGGTGGATGAGCAGACTGCCCAGGAGGAAACTGAAGATAAACTCAAGCAGTGTATAGACAACCTGATGGATAAGAGcACTAAGACGCGTCTAGCAGGTCTCGAGTCGTTGCGACAGGCCTTCTGCTCCAGAGTGCTCTACGACTTCCTGACTGAGAGACGCCTCACTATCAGCGACTGCCTGGAAAGAAGCCTTAAAAAAGGCAGCGTGGAGGAGCAGGCAGCAGCGGCCACACTCTTCACCCTGCTCTGTATCCAGCTGGGGGTGG
>XM_039800446.1
TGCTAACAGAGCTAACCTGGCAACCCCAGCTGCCGGTTGTTTGTTCAGGAGTAGAGAGGAAGATGGTGGACTTGGTGACAACAGCGTGCTCAGAACTCCGTCCCAAACAATTTAGAAAATGCTTAATATCTCAACCTGGTATTAGATATAGATTGCCGGGGGACAATCATAGATAATACATTGTGAAAACCGTTGAATACAGTGACTTTTTCGCCACCGGACAACTCTTTATTCCAAGATTAAAGAAAGCGGGGAGTTGCTGAACCACCAGGTGGTTGCTGCTCGTAAAGGACGCTAACCAACGTTAGCCAAAGTGTCAACAAAAGTGTGAGAGAAGGTGTAATTTTGGAAGCTGCTTTTTACCCAGCTGTCAAGATAAACCACATAGACCATTCagccctctgctgctgctgcctagACACCAACTGTCAAATCTGTGAGGAGCGGATATAACACGTTACCTGACAGTTGGGCTGAAAGTAggctaactttagctagctaacctCAGCTAGCTTTGTTGTGAACTGTGGATCAGAGCGCTACTCAAAATGCCACGGAGTAAAAAGGGGAAACGTGGCTCCAGCAAGCCGGGCTCTCTACGTCAGGAGGTtcttcagctgcagctgtcGGCTAAAGCCTCACTGAAAGgtATTAAAAATGGGATGAAAGGAGAGTCGGGGGCCAGTGATGATGAGCTGACGTCTGATATTCTCAGCCACTGTAGCAGTGCCAGTGAAAGTACCTCTGTGTTGGAAGAGGGCACAGGAGGGGAGCAGGTGGATGAGCAGACTGCCCAGGAGGAAACTGAAGATAAACTCAAGCAGTGTATAGACAACCTGATGGATAAGAGcACTAAGACGCGTCTAGCAGGTCTCGAGTCGTTGCGACAGGCCTTCTGCTCCAGAGTGCTCTACGACTTCCTGACTGAGAGACGCCTCACTATCAGCGACTGCCTGGAAAGAAGCCTTAAAAAAGGCAGCGTGGAGGAGCAGGCAGCAGCGGCCACACTCTTCACCCTGCTCTGTATCCAGCTGGGGGTGGGAGGGTCTGGAAATTCTCCCTGCCTGTCAAGATTGTTGCTGAGATATTTTAAATGGAAGAAGAACAGTTTTAGGGTTGACAagTGTGCCAGAGCTTTGGGGCTGTGCTGTTATGTTTCTACCGCGGAAGAAGGAGAGgaCTTGATCAAGTCATTGGCGCTTCTGGAGAGCGTGTTCATGTCTTCCTACCCCAACAGAGATGGAACGCTGCCCACACCCAAACCCGGCAGTCCAGGCCTCCACAGCGCCGCCCTGCAGGCCTGGTCGCTGCTGGTCACCCTCTGTCCTACATCTAGACTGACTGTGCTGCTAGACCTTCACCTCCCCAAACTGCAGGCTTGTCTGCAGAGCAGTGACGTCAACTACAGGATAGCAGTGGGAGAGACCATCGCCCTGCTGGTGGAGCTGGGACGAGATATAGACGAGgaattTGAGGTGGAGGACAATGAAGGTCTGTCTCAGTGTCTAAAGAGTTTAGCCACAGATGGCAATAAGCACCGAGCCAAGAACGACCGGAGGAAACAGCGCTCCATTTTCAGAGAGGTGCTACATTACATAGAGAACGAGGACTTCACCGAGGAGAAGATCCGGTTTGGAGTGGAGAGCGTCTACATCGACAGCTGGATGAGGAGAAGAATCTACGATGCCTTCAAAGAGATCCTGGAGTCCGGAGTCAGACACCATCTACAGTTCAACCCACTACTGAGAGACATCTTTGGCCTCGGCCCTCCACTCATCCTGGACGCTACTGTCAAAGGCAACAAGATCTCTCGATTTGAGAAGCATCTTTTCAACTCGGCTGCTTTTAAGGCCAGGACTAAACAGAGGAACAAAGTCCGGGACAAACGGGCTGATGTCATGTGAGAGACTGACGGGGATGGAGTGAACGGATGAGTGTACAGTACACGGAACTCCTCGGGCTGTATTGAGATGGATACAAAATGATGCCTTCAACGTTTCAGCTGTCAGACGCACAAAGACTCAACAAACTCTAAACAGggctttttttcctttgtgCACTTCACCTGAAAAAACTAATCCTCCAGATTTAAGACACCCAACAATTATAAAATTTGGCCCCCACTGTTAAAAGGCAATTTACTGTTCCTCCTCGCAGGCATTTGCTTTTCACAGTGAATTGCAACGACAATTGCTCACAGTATTACAAATGCCTGTTCCGAGGCTTCATAGTGGATATGAACTGTAAAACAATGCTAAACGTTTTTTACGTGGGGTTGCAACAACTTCATTAcacaggagaggaaaagaaatgcAGTCTTCAGATatcaaaattatcttttttattaattttatcaATAGAAGTACAGAGAAAGTATAGTATTAAGTGTCATTGTAAGACTCCCAACATTTTGAAGCTTTATGGTAGATTTGAGATCTGTGGAAGCCGTCCATGTTATGGTCACTGAAACCCTCTTTGGTGCTGATGTGTATCGTTTCTGATACTCATCTTGAACTGCTGCCTGGTGGCTTGACAGATCagtcaagtctttttttttattttatttttttaatcctaaTTATTGACTTCGGTTTCCACCATAAAGCTGCTTTTCCTGGACATAATCAGTCCTGGTAAGTCTGTGAAGTTTAATGTTAGATCAGCTTCTGTAACACAAAGCCAAAAAGAGCCACAATATTCCGGAAAAACTCTTCTCCACTCTGAACTAAATATTCCTCGTTATTCCCTCAGTCGTCGTCTGTTTTTCCACCCAGAGTGGCTGCTTCCAACTGCCAAACCAGAAACTGACTTTACAAACAATGCAAcctaaaagaaaatgtgtgtggtgtttttgtgagtgtttttaattgaattttaTTTAACATCATGAAATAAAACGCATAAACACGAAGATGCCtaattttaaaaatcaaattaaAGAGGTAATGTTGTCATCTTTGTATTACTATTTTTTTGGAAAggaaaaatgttttaatcatTTCTGGTGGATAATTGTATTTTACCTTCTAATTTATTAAAAGAACAGTACTGTgtgataatatttttttttttttttaggaaaaatGCTAAGAACTGTTTACAGACACAATGATGGGATACTGATAACGAGAagaatttctatttttattttttttcatgtatatttttaaattcaGGTTGGTGGGTCATACAATCTATCCATGTGCATGTACACATGTATAGACTGTACATAGGGATTTATGGTAAGCTGTGTACTTGAATCATGAGATGCATTTAAAGGATGTCTCCTCTGATGAACAGTGAATACATACAGGCCACTAACCAGAGCTGCTGATCAGAAGTTTGCTGGTGGTGTTTGTAACGGTCAGGTGTTATTGAttatattcaatttaaaaagCACGCTTCACAGTTGCCTGGGAATTTCAGTACCTTGGTGAAAATGTGTCAAGTTTCACAGTTTCTATTGTTGAACCAGGTTTGACCCCCTGCATGATTATTACAGCTTCGCTACACTGTCTCATCAGTGGTTCTGGTGTTAGGGCACACGGACAGAAGATGGATCAAATGAAATAAAGACTATTTAAGCGTG

Function

symbol description
ifrd2 Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human IFRD2 (interferon related developmental regulator 2).

NR:

description
PREDICTED: interferon-related developmental regulator 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71557 False 919 TUCP 0.49 5 27163286 27171167
TU71558 False 976 TUCP 0.49 6 27163286 27171167
XM_039800446.1 True 3589 mRNA 0.44 15 27157588 27171232

Neighbor

gene id symbol gene type direction distance location
zgc:136971 NA coding downstream 601 27146503 ~ 27156987 (-)
sema3b sema3b coding downstream 81237 26989800 ~ 27076351 (-)
chdh chdh coding downstream 381783 26765089 ~ 26775805 (-)
LOC120559562 tkt coding downstream 513008 26627296 ~ 26644580 (-)
LOC120559020 LOC104941497 coding downstream 672804 26476362 ~ 26484784 (-)
amt amt coding upstream 441 27171673 ~ 27183156 (-)
LOC120559022 NA coding upstream 22050 27193282 ~ 27202420 (-)
LOC120559934 NA coding upstream 27480 27198712 ~ 27198827 (-)
prkar2aa LOC103359395,LOC100690733,LOC102203050,LOC108233118 coding upstream 30739 27201971 ~ 27250394 (-)
mgll mgll coding upstream 84749 27255981 ~ 27340972 (-)
LOC120559521 NA non-coding downstream 339018 26817017 ~ 26818570 (-)
LOC120559916 NA non-coding downstream 356434 26797405 ~ 26801154 (-)
G53398 NA non-coding downstream 360381 26796491 ~ 26797207 (-)
G53395 cacna1d non-coding downstream 404549 26750010 ~ 26753039 (-)
G53382 LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371 non-coding downstream 493903 26620041 ~ 26663685 (-)
LOC120558995 NA non-coding upstream 42300 27213532 ~ 27215246 (-)
G53540 NA non-coding upstream 82376 27253608 ~ 27255158 (-)
LOC120558937 NA non-coding upstream 131160 27302392 ~ 27305566 (-)
G53608 NA non-coding upstream 388189 27559421 ~ 27595325 (-)
G53619 NA non-coding upstream 472944 27644176 ~ 27644595 (-)
G53444 sema3g other downstream 191565 26961347 ~ 26966023 (-)
selenok selenok other downstream 362498 26792452 ~ 26795090 (-)
dcp1a dcp1a other downstream 499267 26646814 ~ 26658321 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other downstream 755278 26392012 ~ 26402310 (-)
G53196 NA other downstream 942706 26212993 ~ 26214882 (-)
hyal3 LOC103359396 other upstream 17816 27189048 ~ 27199911 (-)
xpc xpc other upstream 473551 27644783 ~ 27660646 (-)
LOC120558759 NA other upstream 674032 27845264 ~ 27930515 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other upstream 981950 28153182 ~ 28186527 (-)
ajap1 ajap1 other upstream 1800054 28971286 ~ 29029321 (-)

Expression


Co-expression Network