LOC120558995


Basic Information

Item Value
gene id LOC120558995
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27213532 ~ 27215246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71568
acACGAGGCAGCTGTCGGAGAGAAGAGCAACGGGCGAGCGGCACTCTGAGAAAATTTCTACTTCGATCTTACGCAGTGATGACCAACTTTCCATCGgcaaatgaatgggaaattaaaaatgcaatttctGGACATTTCAAACAAGCACCAGGGAGAGCAGGGGGTGGTGGATATGGACAAAGATAATTCATTTTTGCATCTTAAgttgttttacatattttacaatattttatttgataatttttattttctaagttGTTAATATTGTTCTAAATAAATCCTTTATATTCAA
>XR_005639210.1
cttaaaaaaaaaaaaaaaaaaaaaaaagaacgaccgAAAGACAGGGCCCAGCAAGCAATAGCCGTCATTTCAACGTCTCGGTTAAATATAGACCCGATATAGCCCGGCTATGTGTAACCCACTTTTAGCCCAAATAACATTTTAAtctgaataaatgtttttttttcaaaaataaattgtGAGATGTATGATATTCCATCATGTAAGCAAAGTCAACTGCGATTACaagttgtttgtttgctttattttacatgttaTATGTGTAGGCTATGCGTAGCCACGATTTAGCTCATATTCAGACCCGGCTATATTGTAGCCCACTTTTAGTCAAACATTATTAATTGTAGTTTTTGGCCAGACAGTGCATGAAATGGTTGATATCCCATCATGTTCGCATTGGTAATGATATCTACAAAGTTCACTGCGTCATTTCACGACATGGTCGATCTATAGTCACGTATTAGCTCTGAATTGGACGGCTGCGGTCCGCTTTAGCCCACCTGAGTAATCTGGTCTACTTACGGCTTGACTATAGCCCTGATTCAGACCAGCAATATAGTATAAGAATAGTATAAGAATATTAGtctcaaaaatgtttttgctcACACAGCAATGTTTGCTGtcacacataaacataacatTCATACACAATCTACGATATTATTTGActatcatttcattttaaattaaatgcaaTTGCATTTCTCAACCGCTAGATGGCACAATCGAAACACTAATGATTACTGGCATTGCGCGACTATCACTTTAGCCAGATCTTGCGGTAAACATTTCTgccattttaaattttattacACGAGGCAGCTGTCGGAGAGAAGAGCAACGGGCGAGCGGCACTCTGAGAAAATTTCTACTTCGATCTTACGCAGTGATGACCAACTTTCCATCGgcaaatgaatgggaaattaaaaatgcaatttctGGACATTTCAAACAAGCACCAGGGAGAGCAGGGGGTGGTGGATATGGACAAAGATAATTCATTTTTGCATCTTAAgttgttttacatattttacaatattttatttgataatttttattttctaagttGTTAATATTGTTCTAAATAAATCCTTTATATTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71568 False 292 lncRNA 0.36 2 27213532 27214435
XR_005639210.1 True 1103 lncRNA 0.36 2 27213532 27215246

Neighbor

gene id symbol gene type direction distance location
LOC120559022 NA coding downstream 11112 27193282 ~ 27202420 (-)
LOC120559934 NA coding downstream 14705 27198712 ~ 27198827 (-)
amt amt coding downstream 30376 27171673 ~ 27183156 (-)
zgc:136971 NA coding downstream 56545 27146503 ~ 27156987 (-)
sema3b sema3b coding downstream 137181 26989800 ~ 27076351 (-)
mgll mgll coding upstream 40735 27255981 ~ 27340972 (-)
LOC120559857 slc26a6,LOC101470130 coding upstream 126915 27342161 ~ 27380531 (-)
LOC120559858 LOC102789366 coding upstream 165999 27381245 ~ 27396360 (-)
wdr6 NA coding upstream 190170 27405416 ~ 27411803 (-)
celsr3 celsr3 coding upstream 202217 27417463 ~ 27534874 (-)
LOC120559521 NA non-coding downstream 394962 26817017 ~ 26818570 (-)
LOC120559916 NA non-coding downstream 412378 26797405 ~ 26801154 (-)
G53398 NA non-coding downstream 416325 26796491 ~ 26797207 (-)
G53395 cacna1d non-coding downstream 460493 26750010 ~ 26753039 (-)
G53382 LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371 non-coding downstream 549847 26620041 ~ 26663685 (-)
G53540 NA non-coding upstream 38362 27253608 ~ 27255158 (-)
LOC120558937 NA non-coding upstream 87146 27302392 ~ 27305566 (-)
G53608 NA non-coding upstream 344175 27559421 ~ 27595325 (-)
G53619 NA non-coding upstream 428930 27644176 ~ 27644595 (-)
G53621 NA non-coding upstream 448792 27664038 ~ 27665112 (-)
hyal3 LOC103359396 other downstream 13621 27189048 ~ 27199911 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other downstream 42300 27157588 ~ 27171232 (-)
G53444 sema3g other downstream 247509 26961347 ~ 26966023 (-)
selenok selenok other downstream 418442 26792452 ~ 26795090 (-)
dcp1a dcp1a other downstream 555211 26646814 ~ 26658321 (-)
xpc xpc other upstream 429537 27644783 ~ 27660646 (-)
LOC120558759 NA other upstream 630018 27845264 ~ 27930515 (-)
LOC120559779 LOC104918355,LOC103374204,LOC103385013 other upstream 937936 28153182 ~ 28186527 (-)
ajap1 ajap1 other upstream 1756040 28971286 ~ 29029321 (-)
LOC120559896 slc25a45 other upstream 2134832 29350078 ~ 29355884 (-)

Expression


Co-expression Network