LOC120559916


Basic Information

Item Value
gene id LOC120559916
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26797405 ~ 26801154 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639378.1
ATTTACTCTGAAAACCTCTGACCGGAAGTACTAGTTTTCCTCACTTTATTGGCACTTCACGGGTGAAACAAATAGTCTGGTGCAGATGATGCTGATAAAGTAATAACACCGATGGGGACGGATAATGTACCCTTACACTCTGCACCTCAAAGGATAAAATAAGGGCAACgccacatttacacatttacctTCAACTTTGAAGTGTCACAGCCACCGTTACAGAGGCAGCTGTTGGGTTATTAGCTCGACAGACAGTTGTCATGGTCTCTCAGCTTCAGAGGAGACAGTCGACACATCTACTTCCAGTATGAGTGAGTTAACAGACTTTGACAGAGGCCAGATAGTTGGTGCCCAAGTTGCAGGTCTGTCGGTCAGAAAAACTGCTCAGTTATGTGATGTATCAAGTCAAACTGTCTTCAAAGTCATGAGTCACTATAACAAACACGGACACACTTCATCAGCAAAGAAGAACAGTGGGCACAAGGCACAGACGAAGAGGAGAAGACTGACAAAAGCTACAACTAATGGAGAAGTTGCCAGTGGGAAACCAGTATCCAAGTCTGATGAAGAGAGCAAGATACCTGAATCCCAGACCCAAGAAAAGACACAGTGGTGAATGTTTTCCTACTCTGGATATCTCTGCTCCAGTGTACAAAATAATGGAATTACCATATGACTGAGGACATTGGAGCACCTCAGTAGAAATTACAGGGCCTGCTGCCTGCCTGTAAATTGGGATTGCTTGCCGGCACCAAAAGAGACAGTCAGCACTTAAATAGCAGTGTTTAAAGCAATATGAGTGACTTAACAGAGTTTGAACGATGCCAAATAGTCGCTGCGCGGCTGTCAGGGGCATCTGTCACAAAAACTGCACAGCTTTTTAACGTGGCAAGGGGAACAGTCTCCAGAGTCATGACTGTGTACATCAAACATGGGCGAACAGCATCAGCAAAGAAGAACAGCGGGCGCAAGTCAAAGCTCACCGAAAAGGATAGACAGACACTTCTCAGGATAGTCGATGAGCACCCTGAGTATACAGCCTCAAAAATAACCACAGAGTTGAATGGACACCTCTCTCACACCGTCTCAGTCAAAACTATACGGCGTGAGCTTCACAAAGCTGGTATTTTTAGAGGAGCAGCCAGTCGGAAaccagagacagagactgaAACACAGAAGCCAGATGGAAAGAACACTAAACCTAAACCTGGCAAAGAGcatgacacacaaaaacatggcgACGAGAGCACAAAacctgaaatgcaaacaaatgacaaagagTGTGGCACCCAAAAGCCTGTGGGAGACAAAACAATACCTGAACCCCGGGTTAGTGTCGAAGAGTACAACACAGAAAAATCTGGAGAGAATACAACCTGAATCCCAAGTCAGTTAAGAAGAGTACATCACACAAAGGCCTGGTGAAGAGAGCACCGAACCCAAACCTCAGACCAGTGAAAAGGAATAACGTGTTGTATTTTCAGCCTTTCTTATATATCCAGATTGGTCATATTAATAATGGAAAACCACAGAATGCCTACATCCCTTAATGTTGCCCACTGTTAAATGTGACCATGGATTTCTGTTTCaagattttattatttattttgaatgaaTTTAAAAGGGTGCAAGATTCCGGCATATCCCAAGCGGTTTTTGTGTGGTTTGCGAGCAAACGTAACTTAACTGTAGACtaaaagtgaaaatgtccaAACTGTAAATGATAGTTTTTTCCTGATATTTAGACAAATGTCATGCTGAAATAATTGTGTTGCACTGTAAAGCATGGCCTTTTTGAGGttataatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639378.1 True 1891 lncRNA 0.43 3 26797405 26801154

Neighbor

gene id symbol gene type direction distance location
chdh chdh coding downstream 21600 26765089 ~ 26775805 (-)
LOC120559562 tkt coding downstream 152825 26627296 ~ 26644580 (-)
LOC120559020 LOC104941497 coding downstream 312621 26476362 ~ 26484784 (-)
si:dkey-11f4.7 LOC104941497,LOC103384507,LOC102293335 coding downstream 321330 26444951 ~ 26476075 (-)
LOC120559754 prelid3b,LOC102797510,LOC100690371 coding downstream 354760 26435683 ~ 26442645 (-)
sema3b sema3b coding upstream 188646 26989800 ~ 27076351 (-)
zgc:136971 NA coding upstream 345349 27146503 ~ 27156987 (-)
amt amt coding upstream 370519 27171673 ~ 27183156 (-)
LOC120559022 NA coding upstream 392128 27193282 ~ 27202420 (-)
LOC120559934 NA coding upstream 397558 27198712 ~ 27198827 (-)
G53398 NA non-coding downstream 198 26796491 ~ 26797207 (-)
G53395 cacna1d non-coding downstream 44366 26750010 ~ 26753039 (-)
G53382 LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371 non-coding downstream 133720 26620041 ~ 26663685 (-)
G53366 NA non-coding downstream 202527 26591029 ~ 26594878 (-)
G53359 LOC104943886 non-coding downstream 222126 26574152 ~ 26575279 (-)
LOC120559521 NA non-coding upstream 15863 26817017 ~ 26818570 (-)
LOC120558995 NA non-coding upstream 412378 27213532 ~ 27215246 (-)
G53540 NA non-coding upstream 452454 27253608 ~ 27255158 (-)
LOC120558937 NA non-coding upstream 501238 27302392 ~ 27305566 (-)
G53608 NA non-coding upstream 758267 27559421 ~ 27595325 (-)
selenok selenok other downstream 2315 26792452 ~ 26795090 (-)
dcp1a dcp1a other downstream 139084 26646814 ~ 26658321 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other downstream 395095 26392012 ~ 26402310 (-)
G53196 NA other downstream 582523 26212993 ~ 26214882 (-)
emc1 NA other downstream 650160 26136998 ~ 26147245 (-)
G53444 sema3g other upstream 160193 26961347 ~ 26966023 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other upstream 356434 27157588 ~ 27171232 (-)
hyal3 LOC103359396 other upstream 387894 27189048 ~ 27199911 (-)
xpc xpc other upstream 843629 27644783 ~ 27660646 (-)
LOC120558759 NA other upstream 1044110 27845264 ~ 27930515 (-)

Expression


Co-expression Network