G53382 (LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371)


Basic Information

Item Value
gene id G53382
gene name LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26620041 ~ 26663685 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71370
aaataaaagctcagAAAACAGCAAACGTGGTGACAAATGGTTTATTTGCCTTAACAACACACTCCTTTAAGGTTAATTTGGATTCAACTTGAACTTTAAAATAAACTccaaatagaaaaaaacaaacagaattcCATTAACCAGACGCCATTTTTTATTATGTACACAATATAGAATTTAACAttgttaaacagtgtaaaagcTCAAATCTATAGCTTGGACACTGAACTTTCTCTTAATTCTGTAACTAAAAGACTTACTACACACCTAAATTAAAAACGTAAACATTGattactgtgtgtttgtgcatctgTATTCAAGCCTGAATGAGAAGCTTGTCTACCAAATCAAAAAGCCCTTAAGCAGTGTAAACACACTGTGGAAGAAAAAGTGTTCAACCTGTTTAACAGCATCAAATATTCAGTAGGTAAAATAACTACACTTCGTCTGAGGCACATCCTCTTCAGAGGTTGTATTAAAGTAAAAGGAACAGGCAAGTTGAAACTTGCAATTCCCCTTAGTTACTGAAAGCTCTTTATAATGTTTAATGGAGAATTGAACTGATTTTCATTGTCGCATTTTATTCTTTTCAACTATGCGGCTGTTCTGTGTGAGatgcttctctctctcgctttacccctcctcctcctccccccatctGTCACACCCAGTCAGTCAGCCTCACCCTTCCCCTTTAGCTCCTGTACTCATCGCCGCAGTCCCCGATGAGCGCCGTGAGGTCCCTGGAGCGTTGTGTCACTGCTTCGATGGCGGCGAGATCTTCCCCCGTCAGTTTCAGGTCAGGGCTGCAGCTACGCAGACTGTCACTGATGTGTTGCCCCGCCCCTGCGACGCCTAGCCGACAGCCCACAATAACCCCACCCACCGCGGGGCGATCCAGCACATAACGTGTTGCCacgctggccactgagcagtcGTGTCTCCTGGCAGCCGTCTCCAAGGCAACAAGAAGGTCCTGGAAAAGGCTCCAGCCACCCCAAGAGTCGATCATGTTCTTGTACTTCGAGAGGGAGGCGGTGTAGAGCTCCGCCCTGGAATTAGGCTCTGCCTTCCCCAGATAACGCTCTGAGAGTAGACCGCCAG

Function

NR:

description
carboxypeptidase A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71370 True 1104 lncRNA 0.45 2 26620041 26663685

Neighbor

gene id symbol gene type direction distance location
LOC120559020 LOC104941497 coding downstream 135257 26476362 ~ 26484784 (-)
si:dkey-11f4.7 LOC104941497,LOC103384507,LOC102293335 coding downstream 143966 26444951 ~ 26476075 (-)
LOC120559754 prelid3b,LOC102797510,LOC100690371 coding downstream 177396 26435683 ~ 26442645 (-)
actr5 actr5,LOC102798407 coding downstream 205060 26408194 ~ 26414981 (-)
mbd6 LOC103362776 coding downstream 259223 26350788 ~ 26360818 (-)
chdh chdh coding upstream 101404 26765089 ~ 26775805 (-)
sema3b sema3b coding upstream 326115 26989800 ~ 27076351 (-)
zgc:136971 NA coding upstream 482818 27146503 ~ 27156987 (-)
amt amt coding upstream 507988 27171673 ~ 27183156 (-)
LOC120559022 NA coding upstream 529597 27193282 ~ 27202420 (-)
G53366 NA non-coding downstream 25163 26591029 ~ 26594878 (-)
G53324 NA non-coding downstream 39936 26401003 ~ 26580105 (-)
G53359 LOC104943886 non-coding downstream 44762 26574152 ~ 26575279 (-)
LOC120559888 NA non-coding downstream 49069 26570591 ~ 26570972 (-)
G53352 chmp4b,LOC107390603,LOC107086700,LOC106511320 non-coding downstream 77414 26539907 ~ 26542627 (-)
G53395 cacna1d non-coding upstream 86325 26750010 ~ 26753039 (-)
G53398 NA non-coding upstream 132806 26796491 ~ 26797207 (-)
LOC120559916 NA non-coding upstream 133720 26797405 ~ 26801154 (-)
LOC120559521 NA non-coding upstream 153332 26817017 ~ 26818570 (-)
LOC120558995 NA non-coding upstream 549847 27213532 ~ 27215246 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other downstream 217731 26392012 ~ 26402310 (-)
G53196 NA other downstream 405159 26212993 ~ 26214882 (-)
emc1 NA other downstream 472796 26136998 ~ 26147245 (-)
acot7 acot7,LOC102782704 other downstream 647719 25910755 ~ 25972322 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other downstream 1835036 24750431 ~ 24785005 (-)
selenok selenok other upstream 128767 26792452 ~ 26795090 (-)
G53444 sema3g other upstream 297662 26961347 ~ 26966023 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other upstream 493903 27157588 ~ 27171232 (-)
hyal3 LOC103359396 other upstream 525363 27189048 ~ 27199911 (-)
xpc xpc other upstream 981098 27644783 ~ 27660646 (-)

Expression


Co-expression Network