G53324


Basic Information

Item Value
gene id G53324
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26401003 ~ 26580105 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71289
gtgagtgtgtttacatgtgtaaTCCCAGACTTGTTGCTGTCTGcaccaaaaaaaactttatttcttAGAGCGTCTGTTCAGAAAGTAGAGACCCATATTTGATGTACACATTAAATGAAGACTCGGGCACTGAAAGGAGAGATATGCTAATACTGTACAGGCCGCCTCTGCTGTGCAAGGCTAGGAAGAAGGACATCCCCCTCATCAGAAAATAAACtcaaaataatttctttttttcaaattttttggccAGTTTTTAGCAAAAGAATAAGATTTGTGTAGAAACAAGCAATGCTTTGCATCTGTCATCTCCTCTAACTTTAACCCTTCAAAATGTTGTTTGCAGAGGTCAacgaaagaaaataaatgaaacctGAACACAACTTCAGTTGAAAGGATTTAAGTTATAGCAATACGCACACTATCAAGTGTACAATTTGTCAAGGTTCATTTGATTCTAATaaaatacttcttttttttttaaacccatatacatttcatatatttatctttttgggGTATATGGAttcaaaaatatacatttaaatcATAAAGAGAGCGAGAATGGGAGGATAGGGGAGAGAAATTAAACTACAAAAGCTACGAATGGTTGTCCTCCATCcccggggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagagagagagagagagag
>TU71290
tgagagagagagagagagagagagagagagagactgGGAGTTAGGAGGGGATTGGCCAAGCTATACAGCGCAGTTTGACACCCACTTTAGCtcattacacacatacagtcgTGATCAAGGCACAGGGATCTtctaaaagttattttttttcaacaaagttgtacaaaataatacattttacagtctgTACAAGAATAATAGTTCAGCAGTAATGTAAAGACAGACGTACAAAGGAGCAAGAGGTtggggaggaaggagagagaaggaaagatggAGGGATGGCAGAGGGAGGGAATGGCAAGGAGGTGTGAGCGGGCTGTTTGACCACatgaccacaaaaaaaaaaaattagtgtCCCGTTTgttgtttatcttttttttttttttatatttcaggattattctattttattttctcttaaacCAAAAGAGCACAGCCAGGAAGGTAGAAGTGCAGATGGGAAGGTggtggtggtagtggtggtgggGACGAGGAGGTGCAGTCAAGGAGAAaatgagagggagggggagaactGTCAAGATGGAGAGTGATGGAGAGTAAAATTGTCGTATGAGAAAGAAGAGGGGTGAAAAAAGGAGAGAATGAccgagacagagagagtaaaGATAAAGAAAGAGAGCATACAGGGCACAATGGCACAAAAGTCTACACAGTAAAACAGGGTCAATCATGACAAGATGAGAGTTCTCTTTAACTTATATGGTACTGTACTGTAGAAGGATGCTTTTTGCCCTCTGTTAGTTAAGTTCCATAAAAGTTGgcttttttgtgtttctttttgttttaaactcaATGTATCCTCCTCATATTTTGCTCCACTACCAACAAGGCAAAGTCCGGTGGCATAACAGTTCTGTGGAGAAGTCGAGGGACTGCCGTTGTCTCTGGCAAACTTATCTAGACTCCATCAGAGAAATTCACATCGGAGTCAGCTCTGTCCTGTTTAGGTGAACCCCTGCCCCCGCACTGCGGACCCAACTGACCACACCCCTGGTCTGTTTAGTCTGTGGTAACGCTGCTCCTCGTCTGCGCAGTCACTTAGTTCAATCTCAAAGCACTGTGCCGGAAAAAATCCACCGACCGCTCAACCAGCCTGCCACTTGTCGGCAGATCAGTACGTTTCCGTATCCAAGCCGGTTGTGCAGTCCAGTAAAAAGCATGTGATACGTTTCTGTGTGCAAGCAGATCCTGTGGTTGGATTTATGGATGTGTGTAAGTGATAGGAAGGATTGGTGTACACGGATTGAGTCAAGTCCTGAGCAcagtgctttttcttttttttttttttgttagataCAGTGTTTAGCTGATCTGTTGTGACATGTTTATTCTCTATTTGCAGTAATTCAACAGTCCTTGCTTTCCCAGTTGCACTGACGTAGTAGCTCGCTCAGTCTTCATTCTGACCTCAACGAGAGGAAAATCTCACAATCTCAACCGCGGCTCTCAAACCCTCCTCACTGCAGGAAACACAGTCCAGACTGGGCCACTCGGGGTTTCTAGAAAGGTGAGGGTAACGTGTATGGGGACGATATATGATGTTGAGATGTGTGAAGCTGGGAGTATGGCTGAAGGTGAAGATCcgagtctgtgtatgtgttaacCCCTAAAACCCTTCCAGAAAAATAGCGGTGTCTACTGCAGGTAGGGAGTTTGCATCAGGGAAGTTCTGGGTTCAGGGTGTgtctgtaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71289 False 731 lncRNA 0.37 3 26401003 26523921
TU71290 True 1783 lncRNA 0.45 3 26447473 26580105

Neighbor

gene id symbol gene type direction distance location
mbd6 LOC103362776 coding downstream 40185 26350788 ~ 26360818 (-)
kif5aa LOC103362778,LOC100691451 coding downstream 52724 26325890 ~ 26348279 (-)
LOC120559019 LOC102791945 coding downstream 85123 26286548 ~ 26315880 (-)
LOC120558305 NA coding downstream 114714 26276415 ~ 26286289 (-)
LOC120559017 NA coding downstream 168589 26228890 ~ 26232414 (-)
LOC120559562 tkt coding upstream 47191 26627296 ~ 26644580 (-)
chdh chdh coding upstream 184984 26765089 ~ 26775805 (-)
sema3b sema3b coding upstream 409695 26989800 ~ 27076351 (-)
zgc:136971 NA coding upstream 566398 27146503 ~ 27156987 (-)
amt amt coding upstream 591568 27171673 ~ 27183156 (-)
G53240 NA non-coding downstream 36204 26364320 ~ 26364799 (-)
G53162 NA non-coding downstream 188862 26185427 ~ 26212141 (-)
G53194 ubr4 non-coding downstream 192863 26207689 ~ 26208140 (-)
G53185 NA non-coding downstream 205832 26194498 ~ 26195171 (-)
G53179 NA non-coding downstream 211289 26185856 ~ 26189714 (-)
G53366 NA non-coding upstream 10924 26591029 ~ 26594878 (-)
G53382 LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371 non-coding upstream 39936 26620041 ~ 26663685 (-)
G53395 cacna1d non-coding upstream 169905 26750010 ~ 26753039 (-)
G53398 NA non-coding upstream 216386 26796491 ~ 26797207 (-)
LOC120559916 NA non-coding upstream 217300 26797405 ~ 26801154 (-)
G53196 NA other downstream 186121 26212993 ~ 26214882 (-)
emc1 NA other downstream 253758 26136998 ~ 26147245 (-)
acot7 acot7,LOC102782704 other downstream 428681 25910755 ~ 25972322 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other downstream 1615998 24750431 ~ 24785005 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other downstream 2061547 24335149 ~ 24339456 (-)
dcp1a dcp1a other upstream 66709 26646814 ~ 26658321 (-)
selenok selenok other upstream 212347 26792452 ~ 26795090 (-)
G53444 sema3g other upstream 381242 26961347 ~ 26966023 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other upstream 577483 27157588 ~ 27171232 (-)
hyal3 LOC103359396 other upstream 608943 27189048 ~ 27199911 (-)

Expression


Co-expression Network