G53352 (chmp4b,LOC107390603,LOC107086700,LOC106511320)


Basic Information

Item Value
gene id G53352
gene name chmp4b,LOC107390603,LOC107086700,LOC106511320
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26539907 ~ 26542627 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU71334
AGAGATTTCCTGGGCCAGCTCCTGCTGCTCGGTAATGTCCTGCATCAGGTCGTCCACCTTGTCAATGTCCATGTTTTCATGGGCAGACTTCATGGCCTTGGCAGCGAAGCCCATGTTTTTGAGCACTTCAGTGTTGGTGTTGGCGTTCTCCAGAGCCTCTCTCTGGAACTCGATGGTCGACAGGGTGCCGTCGATCTGAGCGAGCTGCTTCTCATACCGCTTCTTTCTTTTCAAAGCTTGCAGAGCCGCTCTTTTGTTTTTCGTGCCGTTTTTCTTGGCAATTTGCAGTTCCTGTTCGATCTTTTTCTCTAGAAATTCCTGTTTCTTCGTTAGCATCTCCTCCGTCTCTCGGAGTTTCTGGATCGCCTCCTGTGGGCTCGGTCCctttcctccttttcctcctcctccaaatATCTTACCAAACAACGACATATCTGGAGTGCTACAGTTAACGTTACactaattataaaaataaataataaaacaaatctgcGCTAGGCTACACTGACACTTCGCCCTAGCCAGAAACCTGGAAGGATTGTTGATGTTTTTC

Function

symbol description
chmp4b Enables protein homodimerization activity. Involved in several processes, including midbody abscission; mitotic nuclear division; and regulation of organelle assembly. Located in several cellular components, including cytoplasmic side of plasma membrane; midbody; and nuclear envelope. Part of ESCRT III complex and membrane coat. Implicated in cataract 31 multiple types.

NR:

description
PREDICTED: charged multivesicular body protein 4b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71334 True 553 lncRNA 0.47 4 26539907 26542627

Neighbor

gene id symbol gene type direction distance location
LOC120559020 LOC104941497 coding downstream 55123 26476362 ~ 26484784 (-)
si:dkey-11f4.7 LOC104941497,LOC103384507,LOC102293335 coding downstream 63832 26444951 ~ 26476075 (-)
LOC120559754 prelid3b,LOC102797510,LOC100690371 coding downstream 97262 26435683 ~ 26442645 (-)
actr5 actr5,LOC102798407 coding downstream 124926 26408194 ~ 26414981 (-)
mbd6 LOC103362776 coding downstream 179089 26350788 ~ 26360818 (-)
LOC120559562 tkt coding upstream 84669 26627296 ~ 26644580 (-)
chdh chdh coding upstream 222462 26765089 ~ 26775805 (-)
sema3b sema3b coding upstream 447173 26989800 ~ 27076351 (-)
zgc:136971 NA coding upstream 603876 27146503 ~ 27156987 (-)
amt amt coding upstream 629046 27171673 ~ 27183156 (-)
G53346 NA non-coding downstream 2651 26504449 ~ 26537256 (-)
G53349 vapb non-coding downstream 6879 26528551 ~ 26533028 (-)
G53335 NA non-coding downstream 95009 26443082 ~ 26444898 (-)
G53240 NA non-coding downstream 175108 26364320 ~ 26364799 (-)
G53194 ubr4 non-coding downstream 331767 26207689 ~ 26208140 (-)
LOC120559888 NA non-coding upstream 27964 26570591 ~ 26570972 (-)
G53359 LOC104943886 non-coding upstream 31525 26574152 ~ 26575279 (-)
G53366 NA non-coding upstream 48402 26591029 ~ 26594878 (-)
G53382 LOC103362754,LOC107086658,LOC100689745,LOC101161804,LOC104940874,LOC105936371 non-coding upstream 77414 26620041 ~ 26663685 (-)
G53395 cacna1d non-coding upstream 207383 26750010 ~ 26753039 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other downstream 137597 26392012 ~ 26402310 (-)
G53196 NA other downstream 325025 26212993 ~ 26214882 (-)
emc1 NA other downstream 392662 26136998 ~ 26147245 (-)
acot7 acot7,LOC102782704 other downstream 567585 25910755 ~ 25972322 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other downstream 1754902 24750431 ~ 24785005 (-)
dcp1a dcp1a other upstream 104187 26646814 ~ 26658321 (-)
selenok selenok other upstream 249825 26792452 ~ 26795090 (-)
G53444 sema3g other upstream 418720 26961347 ~ 26966023 (-)
ifrd2 ifrd2,LOC104928016,LOC104966933 other upstream 614961 27157588 ~ 27171232 (-)
hyal3 LOC103359396 other upstream 646421 27189048 ~ 27199911 (-)

Expression


Co-expression Network