RNA id: XM_039801738.1



Basic Information


Item Value
RNA id XM_039801738.1
length 430
RNA type mRNA
GC content 0.52
exon number 5
gene id selenok
representative False

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26792452 ~ 26795090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ggtggcggtaatgTTGTTTTGCCAACCGCCAATAAAccacgaagaagaagaagaagaagaagaagaagaacgacACAACGGACACAACCGACACGGAAGTGCGCGTTGTAAACACAGCTGTGAATCTTTGGCTGTTGACGTTACTTTCACAAAGATGGTGTACGTGTCCAACGGTCAGGTCCTGGACAGCAGGTCCCAGTCACCATGGCGACTGTCCTTACTAGTCGATCTCTTCTGGGGGGCAGTGGAATTCATCGGCCTGTTTTTTAAATCAATTATTCACCCCGACTTGACAAAGGATGGAAACTATGGTTCGTCACGCTTTACTGATGGCAGAGGTCCTCCAGGTCCCCCTGGTGGCAGACGACGGATGGGAAGAGTAAACCACGGTGCAGGTCCCAGCGCTCCACCGATGggtggaggaggatga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71390 lncRNA downstream 40195 26750010 ~ 26753039 (-) True G53395
TU71370 lncRNA downstream 129549 26620041 ~ 26663685 (-) True G53382
TU71351 lncRNA downstream 198356 26591029 ~ 26594878 (-) True G53366
TU71343 lncRNA downstream 217955 26574152 ~ 26575279 (-) True G53359
XR_005639377.1 lncRNA downstream 222262 26570591 ~ 26570972 (-) True LOC120559888
TU71393 lncRNA upstream 1401 26796491 ~ 26797207 (-) True G53398
XR_005639378.1 lncRNA upstream 2315 26797405 ~ 26801154 (-) True LOC120559916
XR_005639307.1 lncRNA upstream 21927 26817017 ~ 26818570 (-) True LOC120559521
TU71413 lncRNA upstream 22090 26817180 ~ 26818290 (-) False LOC120559521
XR_005639210.1 lncRNA upstream 418442 27213532 ~ 27215246 (-) True LOC120558995
XM_039801759.1 mRNA downstream 17429 26765089 ~ 26775805 (-) True chdh
XM_039801760.1 mRNA downstream 17753 26765089 ~ 26775481 (-) False chdh
XM_039801637.1 mRNA downstream 134913 26646814 ~ 26658321 (-) True dcp1a
XM_039801384.1 mRNA downstream 148654 26627296 ~ 26644580 (-) True LOC120559562
XM_039800445.1 mRNA downstream 308450 26476362 ~ 26484784 (-) True LOC120559020
XM_039800896.1 mRNA upstream 194710 26989800 ~ 27076351 (-) False sema3b
XM_039800899.1 mRNA upstream 194710 26989800 ~ 27027938 (-) True sema3b
XM_039799234.1 mRNA upstream 351413 27146503 ~ 27156987 (-) True zgc:136971
XM_039799235.1 mRNA upstream 351413 27146503 ~ 27156894 (-) False zgc:136971
XM_039799232.1 mRNA upstream 351413 27146503 ~ 27156877 (-) False zgc:136971
XR_005639354.1 other downstream 134913 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other downstream 134913 26646814 ~ 26658321 (-) False dcp1a
XR_005639353.1 other downstream 134913 26646814 ~ 26658321 (-) False dcp1a
XR_005639352.1 other downstream 134913 26646814 ~ 26658321 (-) False dcp1a
TU71098 other downstream 578352 26212993 ~ 26214882 (-) True G53196
TU71453 other upstream 166257 26961347 ~ 26966023 (-) True G53444
TU71557 other upstream 368196 27163286 ~ 27171167 (-) False ifrd2
TU71558 other upstream 368196 27163286 ~ 27171167 (-) False ifrd2
TU71566 other upstream 393986 27189076 ~ 27190197 (-) False hyal3
XR_005639389.1 other upstream 403622 27198712 ~ 27198827 (-) True LOC120559934

Expression Profile