RNA id: XM_039801760.1


Basic Information

Item Value
RNA id XM_039801760.1
length 2303
RNA type mRNA
GC content 0.52
exon number 10
gene id chdh
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26765089 ~ 26775805 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCCTTATCCCTCTAACGTGAATGAAGAAAGCCCTCCCAGAAGCAGGATGTCGTTTTTGGCCAATTTAGGCCAAACTGGAGCCCGACGAGTTGTGACTCGAGGGAGATTTACAAGGGATGGCAGGTGCCTGTTTACCGGTTTGCTAGAATTTGTCCCCAGGACCAGAAACATGGGCCAGTCCTTCTTCTGCGCCTCCTCAAACCATTACAGATGCTTTAGTGCCACAGCTGCTCATTTGAACGCTTCATCATCAcctacagccaatcagaaaacacCGTCCTACAGTTATATCATTGTTGGAGCAGGGTCAGCGGGCTGCGTCCTTGCCAACCGTCTCAGTGAGGATACCCATGAGTCTGTGCTGCAGCTGGAGGCTGGGCCTAAGGACATGGTGTTAGGCAATTTACGACTCTCATGGAAGATCCACATGCCCGCTGCGCTGACCTACAACCTCTGTGATGACAAGTATAACTGGTACTACCACACTTTACCTCAGGCCCACTTAAACAACCGGGTGATGTACTGGCCGAGGGGCCGTGTCTGGGGCGGGTCCTCTTCACTCAACGCCATGGTGTACATTCGTGGACACGCTGAAGACTACAATCGCTGGCAGACAGAGGGGGCAGAGGGCTGGGATTATGAACACTGTCTGCCTTACTTTAGGAAAGCTCAGTGTCATGAGCTGGGAGAAAACAGGTACCGGGGAGGCAGCGGACCTCTTCATGTGTCCAGAGGGAAGACCAACCATCCCCTTCATAAAGCTTTCATTGAGGCGGGGCAGCAGGCAGGATACCCCTTCACTGATGACATGAACGGACACCAACAGGAGGGCTTGGGCTGGATGGACATGACTATTTTTAAAgGAAAGAGGTGGAGCACAGCGAGTGCCTACCTGAGACCTGTTCTGGGTCGGCCCAACCTGAAGACAGAGGTGCACTGCTTGACCACCAAGATCCTGTTTGATGGCAACCGCGCCGTGGGTGTAGAATACACACAGAAAGGACAAAAGAAAAGGGCATTTGCAGATAAAGAGGTGATATTAAGTGGAGGAGCCATTAACTCCCCTCAGCTTCTCATGCTGTCTGGAGTGGGAAACGCTGATGACCTGAAACAACTTGGCATCCCTGTAGTTCAGCACTTACCAGGTGTTGGCAGTAACCTGCAGGATCATTTGGAGCTGTACGTCCAGCAGCAGTGCACGCAGCCTATCACCCTGTACAAGGCCCAGAAACCTTTCCACATGGTCAAGATAGGCCTGGAGTGGCTCGCTCTGTTTACTGGTTACGGCGCAACAGCCCACTTGGAGAGTGGAGGGTTCATCCGCAGTCGGCCACACGTCACACACCCCGACATCcagtttcacttcctgccctcGCAGGTCATCGACCACGGACGAGTTGCCTCCAAGGTCGAGGCatatcagGTTCATGTCGGTCCAATGAGAAGCACCAGTATCGGCTGGATAAAGCTGAAGAGCGCCAACCCTTTGGATCACCCAATTCTCCAGCCAAACTATCTCTCCACCGATGTTGATGTGTGGGAGTTCAGGGAGTGTGTCAAACTCTCCAGAGAGATTTTCACCCAGAAGGCCTTCGACCCGTTCCGTGGTAGCGAAGTCCAACCCGGTCCTCAGGTCCAATCCGACACCGACATTGACGCTTTTGTTCGGCAGAAAGCTGACAGCGCCTACCACCCGTCCTGCACCTGCAAGATGGGCTCGCCATCCGACCCGATGGCGGTTGTCGACTCGAACACGCGCGTCCTGGGGCTGGAGCGGCTGCGTGTGGTCGACGCCTCCATCATGCCCAGCATTGTCAGCGGCAACCTGAACGCTCCGACCATCATGATGGCAGAGAAGGCTGCTGACATCATCAGAGGTCGCCCTCCTCTGGTTGACCCCGGGGTTCCCGTGTACCGACCGCCGACACTCGACACACAGAGATGAACAGAGAGAGCGAGTAAAGGGTAAACACAATCCCAAATCAACAATCCATTATCAAGCAACAACAGCAGTGAACAGCTAATTGTGTTATGATTATTTTGCCCTGGATCTGATAATACCATTGATTTTAGCAGTTTACATGTAAAAATCTAGTTTTTCAGTAGCTTACTTGGAGTCTTCTGATTAGGAAACAGGGGCTCTGTCACTTGTTGTTATTCTCCATCTCAAGTAACCTTAAAGCTAATGTGATTTTAGGGACCGTtcagtatttatggaatggaccacctgaggaaaataggggagggtcttgtctttttattctttgttgatgggagggtcatccaatttttttaagtcta

Function

GO:

id name namespace
GO:0019285 glycine betaine biosynthetic process from choline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0008812 choline dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71390 lncRNA downstream 12050 26750010 ~ 26753039 (-) True G53395
TU71370 lncRNA downstream 101404 26620041 ~ 26663685 (-) True G53382
TU71351 lncRNA downstream 170211 26591029 ~ 26594878 (-) True G53366
TU71343 lncRNA downstream 189810 26574152 ~ 26575279 (-) True G53359
XR_005639377.1 lncRNA downstream 194117 26570591 ~ 26570972 (-) True LOC120559888
TU71393 lncRNA upstream 21010 26796491 ~ 26797207 (-) True G53398
XR_005639378.1 lncRNA upstream 21924 26797405 ~ 26801154 (-) True LOC120559916
XR_005639307.1 lncRNA upstream 41536 26817017 ~ 26818570 (-) True LOC120559521
TU71413 lncRNA upstream 41699 26817180 ~ 26818290 (-) False LOC120559521
XR_005639210.1 lncRNA upstream 438051 27213532 ~ 27215246 (-) True LOC120558995
XM_039801637.1 mRNA downstream 106768 26646814 ~ 26658321 (-) True dcp1a
XM_039801384.1 mRNA downstream 120509 26627296 ~ 26644580 (-) True LOC120559562
XM_039800445.1 mRNA downstream 280305 26476362 ~ 26484784 (-) True LOC120559020
XM_039801742.1 mRNA downstream 289014 26444951 ~ 26476075 (-) True si:dkey-11f4.7
XM_039801746.1 mRNA downstream 322444 26435683 ~ 26442645 (-) True LOC120559754
XM_039801738.1 mRNA upstream 17753 26793234 ~ 26795090 (-) False selenok
XM_039800896.1 mRNA upstream 214319 26989800 ~ 27076351 (-) False sema3b
XM_039800899.1 mRNA upstream 214319 26989800 ~ 27027938 (-) True sema3b
XM_039799234.1 mRNA upstream 371022 27146503 ~ 27156987 (-) True zgc:136971
XM_039799235.1 mRNA upstream 371022 27146503 ~ 27156894 (-) False zgc:136971
XR_005639354.1 other downstream 106768 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other downstream 106768 26646814 ~ 26658321 (-) False dcp1a
XR_005639353.1 other downstream 106768 26646814 ~ 26658321 (-) False dcp1a
XR_005639352.1 other downstream 106768 26646814 ~ 26658321 (-) False dcp1a
TU71098 other downstream 550207 26212993 ~ 26214882 (-) True G53196
TU71391 other upstream 16971 26792452 ~ 26795028 (-) True selenok
TU71453 other upstream 185866 26961347 ~ 26966023 (-) True G53444
TU71557 other upstream 387805 27163286 ~ 27171167 (-) False ifrd2
TU71558 other upstream 387805 27163286 ~ 27171167 (-) False ifrd2
TU71566 other upstream 413595 27189076 ~ 27190197 (-) False hyal3

Expression Profile