RNA id: XR_005639354.1


Basic Information

Item Value
RNA id XR_005639354.1
length 1997
RNA type transcript
GC content 0.50
exon number 10
gene id dcp1a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26646814 ~ 26658321 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCGTGTGTCTCCAGAAATCGGTCCGTGCGGGAGCAACAATCACATACAAGATGGAGACCGTAAATGCTGGACAAATGATGAGTTTAGCAGCTCTACAGAGACAAGACCCATATATTAACAGGCTGCTCGATGTTACCGGCCAGGTGGCTCTCTACAACTTCAACTCAAAAGCGAACGAATGGGAGAAGACCGAAATCGAGGGCACCCTGTTTGTTTATGCAAGGTCTGCCTCGCCTCACCATGGTTTCACCATCATGAACCGACTGAGCACAGAGAACCTAGTGGAGCCGATCAACAAAGACCTGGAGTTCCAGCTGCAGGATCCCTTCCTGCTCTATAGGAACGGCAACTTGGGTATCTACAGTATTTGGTTCTATGACAAGAGGGACTGTCAACGCATCGCTCAGCTGATGGCCAAGATTATGAAACAAGAAGCAGACCATGCCCAAAGAAAGTCGCCGGAGAGGGCAGAGCCTGGAAAGACCAATGGTGTCGCAGAACCACGGCCCATCGACATCCTAGAACTGCTCAGCAAAGCCAAGGAGGAATACCAGAGAgCTCTAACAGGTGACACAGATGTGTCCGCAGAGCCTAATGTGAAATCGGCCATCAATGCCACGGAGCATGCCCACAGCACACCACAACCAGAAAAGAGCTCTCATACAATGGTGAAGCAGATCACAGTTGAGGAGCTCTTTGGATCGTCCCTCCCTAAGGACCCCTCTCTACCCACCATGCCCACACAGAACACCACCACAGCTTCCAGTGACCCCTCCACTGCTTACCTCCGGGACCAGTCTTATCCCTCTCCAGCCCGCCAACACCCACTCTTTCCTCCCCATGTCACATCCCAGGACCCTGGTTCAAGTCAGCGGCACCAAGTACACGGCCTGCTCCCAGCTCCGTATGCGCTACACCCCAGCCCTGTTTTTCAGTCAGTGGTCCCCAGGTCAGACCCCCAACCTCAGTGCTCAGTCTCCCCTCTCATGGTGCTTCCAGCTGGCTCAGAGCCTCGTGCTCTCCCTGGTCCTGCAGCACCATCAGCAGCTCCTACGGCCTATTTGGGACAGGAGATACTCAACACCCTCAAAGCAGCAGTGCCATCTGTGAATTCGGACATCCACAAACCCATCCTCGCGCCAAACTTTCTGCCAAGCATGCTGTTCCCACCCCACAGCTTCCAAGAGCCAATGGGGAAACCTATTCTTCAGCATGGCAAGGAGATGGATGTTTTCTCTCAGCCTCCAAACCTGATTAAACCAATGTCTGCTGTCCCCATTAGTCCAGGTCTTGCTGTTCCAAGGCCGGCAAATTCTGTGCTCCTCTCCCCCAGCGTCTTCCAGCAGTCCATCAGTAAAacgacagcagcagcatcagtggTCCCTCCTGCCCCCTCCGAGCCCTCGTCCTCTGTAGGAGCTTTAGAGCCTCCACAAGCAGCCTGCAGCATAACACAGCTGCAGGATACTCTGATACACCTCATTAAGAATGACCCAGAGTTCCTCAGTGCCATTCATGATGCTTACCTGCAGAGTCTGTCCAAGGACTTCAGCAACATGAAGCTATAGTCTACTTCAACCATCATCACTGACACTTTCAGCGCTACCGCCCCTTTGTAACCTTTGAAGAATCCAGAAGTTAATGGGAGTTAAAAGCAGTGCAGATAACAGTAAAAGGCTACTGCAGCACAAAACCGTACACTCTGCAGACCGCAGTGGGAACAGGAAGAAGCACATCTGCCTCCTCATCATGTGTAACGCTGTGTAACGCTGTGTAACGCTGTGTAACGCTGTGTAACGCTGTGTGgcttttaatgcagtttgtgaACAAAAAACTATTCTAATGTACATCAGAAAATAAGCTTTCAAAGATTTAGAAAGGTTTATGTGGCGtgtgggaattttttttttaaacccccaCACAGATTACTAATATGTTTCATTTACCACAAAATGTTCAGCACATACAAGACCATTACAAACGtctaaaaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71351 lncRNA downstream 51936 26591029 ~ 26594878 (-) True G53366
TU71290 lncRNA downstream 66709 26447473 ~ 26580105 (-) True G53324
TU71343 lncRNA downstream 71535 26574152 ~ 26575279 (-) True G53359
XR_005639377.1 lncRNA downstream 75842 26570591 ~ 26570972 (-) True LOC120559888
TU71334 lncRNA downstream 104187 26539907 ~ 26542627 (-) True G53352
TU71390 lncRNA upstream 91689 26750010 ~ 26753039 (-) True G53395
TU71393 lncRNA upstream 138170 26796491 ~ 26797207 (-) True G53398
XR_005639378.1 lncRNA upstream 139084 26797405 ~ 26801154 (-) True LOC120559916
XR_005639307.1 lncRNA upstream 158696 26817017 ~ 26818570 (-) True LOC120559521
TU71413 lncRNA upstream 158859 26817180 ~ 26818290 (-) False LOC120559521
XM_039801384.1 mRNA downstream 2234 26627296 ~ 26644580 (-) True LOC120559562
XM_039800445.1 mRNA downstream 162030 26476362 ~ 26484784 (-) True LOC120559020
XM_039801742.1 mRNA downstream 170739 26444951 ~ 26476075 (-) True si:dkey-11f4.7
XM_039801746.1 mRNA downstream 204169 26435683 ~ 26442645 (-) True LOC120559754
XM_039801863.1 mRNA downstream 231833 26408194 ~ 26414981 (-) True actr5
XM_039801759.1 mRNA upstream 106768 26765089 ~ 26775805 (-) True chdh
XM_039801760.1 mRNA upstream 106768 26765089 ~ 26775481 (-) False chdh
XM_039801738.1 mRNA upstream 134913 26793234 ~ 26795090 (-) False selenok
XM_039800896.1 mRNA upstream 331479 26989800 ~ 27076351 (-) False sema3b
XM_039800899.1 mRNA upstream 331479 26989800 ~ 27027938 (-) True sema3b
TU71098 other downstream 431932 26212993 ~ 26214882 (-) True G53196
TU70950 other downstream 674642 25947381 ~ 25972172 (-) False acot7
TU70611 other downstream 1893727 24750440 ~ 24753087 (-) False phactr3a
TU70430 other downstream 2307358 24335149 ~ 24339456 (-) False masp2
TU70089 other downstream 3327130 23308500 ~ 23319684 (-) True G52501
TU71391 other upstream 134131 26792452 ~ 26795028 (-) True selenok
TU71453 other upstream 303026 26961347 ~ 26966023 (-) True G53444
TU71557 other upstream 504965 27163286 ~ 27171167 (-) False ifrd2
TU71558 other upstream 504965 27163286 ~ 27171167 (-) False ifrd2
TU71566 other upstream 530755 27189076 ~ 27190197 (-) False hyal3

Expression Profile