RNA id: XM_039801863.1


Basic Information

Item Value
RNA id XM_039801863.1
length 2537
RNA type mRNA
GC content 0.51
exon number 9
gene id actr5
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26408194 ~ 26414981 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCCACTCGGCTGTATTTTGCAGTGACTCACTTTCAAAATGGCTTCCAAACAGGAATCGGTCTATCAAATATTCTCATTTCAGGACTGCAAATCCTCTCCCGACCCGATTTTTGAACTCCCAGCCCAGTGTCTGACCCCTGAACCGGTCCCTATAGTGATAGATAACGGCTCCTTTCAGACCCGGGCCGGCTGGGCGGCTCCAGCGGCGGAGTTTGAGTCTCCGCTGCTGCTCTTCAGGTCGGTGGCGGCGCGCAGCAGAGGGGCCGCCCGCAGCGAGACGCAGATCGGTAACGATATCCCAAACCTGGAACCTCTGCGGTGGCTGCTGAAGAGCCAGTTCGACCGAAACGTGGCGGTCAACTTTGAGATCCAGGAGCTCATGTTCGACTATGTGTTTACTCACCTGGGCATCAGCTCAGAGGGCAGTGTGGCACACCCTATTGTGCTGACAGAGGCGCCCTGCAACCCGCTGCACTGTCGGCAGATGATGTCAGAGTTGCTGTTTGAGTGCTACCGTGTACCGCACGTCTCCTATGGCGTGGACAGCTTGTACAGTTTCTACCACAATAACACTCGAAGGAAACTCCAGCCACCGCACACCGGCATTGTTCTGTCCTCAGGATTCCACTGTTCACACATTTTGCCTGTTATCAACGGCAGGTTTGATGCGGTAAACTGTAAGCGTGTGAACGTGGCTGGGAGTCAGGCAGCGTCCTATCTGCAGCGCCTCCTCCAGCTGAAATACCCAGGTCACCTCGCCGCCATCACACTCAGCCGCGTGGAGGAACTGCTGCATGAACACAGTTACACTGCTGTGGATTACCATGAAGAGCTGGAAAAGTGGCGCAGCCCAGAGTTTTATGAGCGGGAGGTTCACCGTATGCAGCTTCCCTTCTCGGGTAAAGTGCCGGGCGGTTGTGTGAGCGTGGAGGAGAGGCAGGAGAGACGAGCTCAGCAGCTTCGACGGCTTCAGGAGATCAATGCTCGCCGCCGGGAGGAGAAGCTGCTGCAGGACCAGGAGAGGCTGGACAGACTTATGGCAGTGCAGgAGCTGCTGGAGGACGGCCTGTTGGATCAATTTCATAAGAGCCTGGTGGAGCTCAACATGGACTCGGCCGAGGAGCTGCAGTCGTACATCAACAAGCTGCAGCTGGCTGTGGAGCAGGGCAGACAGAAACTGCTGCACAGCGACGGAGCAGAGGGAAAGCCTGAGGTGTCTGAGCTGGAGCAGCCGATGGACGAGGGAGACGGAGTGGCACTGATGGATCCTGACTTCCCTGAGGACACGCTGCCAGAAAAACCTGCTAATGTGGTTCAGCCCGTGTTCAACATGGCGGAGTACCACCAGCTGTTTGTAGGGACGGAGCGACTGCGGTGTCCAGAGATCCTGTTCCAGCCCTCGCCAACCGGGGAGGACCAGATGGGACTGATGGAGACTCTGCAGTACGTCCTGGCCAGGTACACACCAGAGCAGCAGGAGGCGCTGGTGAGCAATGTGTTTCTGACAGGAGGGAACATGCAGTACCCTGGGATGAAggagagagtggagagagaACTGCTGGCTATGAGGCCCTTCCAGTCACACTTTAAGGTGACAATTGCGTCTCGGCCGGCCCTGGATGCCTGGTACGGGGCGAGAGACTGGGCCTTGGAACATCCACTTAGTGGAGAGGGAGGAGCGGCAGAGGGGTGGATCAGCAGACAGGAGTACGAGGAGAAAGGAGGCGAGTACCTGAGCGAGCACTGTGCCTCTAATGTCTTCATTCCCATGAAAATCGCCAAACCAGTTCCGGCTCGCCCCACCGAGCCCTCTGTTACCACACTGACATCGACCGGAGCTTCTGCTGCCGTCACCACGGTTACGTCTGCCCTGGCTCCCTCCTCTTCTACTGCTGCTACTGATGTTTCTATGGTTACCTCCTAAACTGGGATCTCAGTTATGAGCCTTTGATGTTCAGTGAATTATAGCAGATGTGATGCATATCAAAGGTAAAGAAGACCTTGCTCTTTGATTCTGAGGGACTGAAAACAAAACTTTATATTTATCGTTGAGGATTCAGATAGGTGGTCCTGCCCAAAACATGATTTTAACTGCAAATAACATATCTCAATGTGGTCTGCTATTAGACATTTCTCTGTGGAAATCTAAAGAAATACACCACCAAACAACATTACAAGCTCAGAAATATAAGGTACATTAGCAGTAgctgttattctttttttttaaattttttttttaccaaaaaccAACTAAGGCACCATTCAGAAATGTTGAATGGAAAGTTACTTCCTGTCTGTTCTCAATCTTCATCTATTTGTTTTTGGTCTCCTGTGAGTTTGTAACTTTTCTGACTGTTTTGgaaatacagttttattttcataatgCTTTGGGGAAACCACAAGAGACCGTTCATATTGAATGGTCATCAAAGGAATGATCTTAAAAGCTCTAGTGGGGATATTTTGTATtactatataaatgtaatttgttgtttgtatgttttaaaaaatatatatattttcactgATGGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0031011 Ino80 complex cellular_component

KEGG:

id description
K11672 ACTR5, ARP5, INO80M; actin-related protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71286 lncRNA downstream 5893 26392012 ~ 26402301 (-) True LOC120559114
TU71167 lncRNA downstream 43395 26364320 ~ 26364799 (-) True G53240
TU71095 lncRNA downstream 200054 26207689 ~ 26208140 (-) True G53194
TU71086 lncRNA downstream 213023 26194498 ~ 26195171 (-) True G53185
TU71080 lncRNA downstream 218480 26185856 ~ 26189714 (-) False G53179
TU71307 lncRNA upstream 28101 26443082 ~ 26444898 (-) True G53335
TU71290 lncRNA upstream 32492 26447473 ~ 26580105 (-) True G53324
TU71326 lncRNA upstream 89468 26504449 ~ 26537256 (-) True G53346
TU71331 lncRNA upstream 113570 26528551 ~ 26533028 (-) True G53349
TU71334 lncRNA upstream 124926 26539907 ~ 26542627 (-) True G53352
XM_039800570.1 mRNA downstream 5884 26396776 ~ 26402310 (-) False LOC120559114
XM_039799703.1 mRNA downstream 47376 26350788 ~ 26360818 (-) True mbd6
XM_039799705.1 mRNA downstream 59915 26325890 ~ 26348279 (-) False kif5aa
XM_039801746.1 mRNA upstream 20702 26435683 ~ 26442645 (-) True LOC120559754
XM_039801742.1 mRNA upstream 29970 26444951 ~ 26476075 (-) True si:dkey-11f4.7
XM_039800445.1 mRNA upstream 61381 26476362 ~ 26484784 (-) True LOC120559020
XM_039801384.1 mRNA upstream 212315 26627296 ~ 26644580 (-) True LOC120559562
XM_039801637.1 mRNA upstream 231833 26646814 ~ 26658321 (-) True dcp1a
TU71098 other downstream 193312 26212993 ~ 26214882 (-) True G53196
TU70950 other downstream 436022 25947381 ~ 25972172 (-) False acot7
TU70611 other downstream 1655107 24750440 ~ 24753087 (-) False phactr3a
TU70430 other downstream 2068738 24335149 ~ 24339456 (-) False masp2
TU70089 other downstream 3088510 23308500 ~ 23319684 (-) True G52501
XR_005639354.1 other upstream 231833 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other upstream 231833 26646814 ~ 26658321 (-) False dcp1a
XR_005639353.1 other upstream 231833 26646814 ~ 26658321 (-) False dcp1a
XR_005639352.1 other upstream 231833 26646814 ~ 26658321 (-) False dcp1a
TU71391 other upstream 377471 26792452 ~ 26795028 (-) True selenok

Expression Profile