RNA id: TU71098



Basic Information


Item Value
RNA id TU71098
length 1172
RNA type TUCP
GC content 0.43
exon number 2
gene id G53196
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26212993 ~ 26214882 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCACATATATCACTTCCAGTCGATACAATGACAAGGATATCTCCTTCGTTGTGGCACATCAGCTGAGCGACAAGAGGCCAGCGAAGGGCCCCTCCCACCTGTTTGTTTGGATTGGGGCCATTGTACCCCATGAATTCAACTAATTCATTCACATCCTATTGTCATAACACTGCTTTGTGATTGGCCAAACACTGTGAGAACCAGCATCACATTAAATCGATGGGAAAGTTGGTATAAGTATATAAAGGAGGGAGGTCGCAGTGGGTAAAATCATAACTCTGAACGCCTCTTGTAGCTGACACAGGCCTGGACTGACTGGACACCATTTGACTGCATATTCACCATGAGGGATCAGCACACAACCATGTGTAAGGTGATGGTTTTGGAGAGGAAATGCACAGACAGAGCAGTGAGGCTCCGCTCAGCACTGGAGAGCCAACTCGACACTGGGGTGTCCAGCTCTGATGTGTGGGACAAGACTGTCTCCTTCTTCACAGTAAAGAAGGCCTTGATTTTCCGTAACGGCTACACCAAATCCTCCAGAGAGGCCATGCGGCTGTTCCCCTCACCTGCTGAGGACGTGACACCGCTGTGCTGCCAGTAAGAGgtggacacacacataaagaggaCATGAAATGAGATGGGATGTGTGGGACGGTGTCTACAAGCTTCATAGTACTGAACATTGTCAAGAAGAAGCTCCAAATGGAAAACATTCTTCAGATGAAAAAggactttaattcttgtgttctCATCGGTGTTTTCACTTCAGTTGGCTGGAAAATGTGGAAACGATGGGAGATTTATACCATATACCCTGTGATCTTATTGGTTCACATATTGGCATTAAAATGTGCATTGTATGCCTTAAGCCTTAGTACTCATTGAAACGGGTCACCTGAAGACCATGTTGTTGAGGTGGTTAAACTAAAGCCATATTCCTTTGTATAAAGGGGAAATGTGTATGCCAATGCATACtttgttttgtaaatttttttacattgtgttgAGTGGTTATTTTTAGTGAAGTATGAAATGTCGCTGAAAGTGTGCTAAATGTGCAATATGCGCTTTCGTATGCAAGTTGAGAATAAAGTgatattgatgttttcctcACATTGTTTGATTCAAAAATTATTTCCTATTAAAAATGATAGATTATATTGACTAgc

Function


GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71061 lncRNA downstream 852 26185427 ~ 26212141 (-) True G53162
TU71095 lncRNA downstream 4853 26207689 ~ 26208140 (-) True G53194
TU71086 lncRNA downstream 17822 26194498 ~ 26195171 (-) True G53185
TU71080 lncRNA downstream 23279 26185856 ~ 26189714 (-) False G53179
TU71079 lncRNA downstream 23279 26188337 ~ 26189714 (-) True G53179
TU71167 lncRNA upstream 149438 26364320 ~ 26364799 (-) True G53240
TU71286 lncRNA upstream 177130 26392012 ~ 26402301 (-) True LOC120559114
TU71289 lncRNA upstream 186121 26401003 ~ 26523921 (-) False G53324
TU71307 lncRNA upstream 228200 26443082 ~ 26444898 (-) True G53335
TU71290 lncRNA upstream 232591 26447473 ~ 26580105 (-) True G53324
XM_039800525.1 mRNA downstream 65748 26137179 ~ 26147245 (-) True emc1
XM_039800526.1 mRNA downstream 65749 26137179 ~ 26147244 (-) False emc1
XM_039801278.1 mRNA downstream 93659 26109567 ~ 26119334 (-) True LOC120559533
XM_039801277.1 mRNA downstream 111597 26096325 ~ 26101396 (-) True taf10
XM_039799752.1 mRNA downstream 117416 26078812 ~ 26095577 (-) True ppih
XM_039799534.1 mRNA upstream 10247 26225129 ~ 26226447 (-) True LOC120558512
XM_039800441.1 mRNA upstream 14008 26228890 ~ 26232414 (-) True LOC120559017
XM_039799223.1 mRNA upstream 61533 26276415 ~ 26286289 (-) True LOC120558305
XM_039799224.1 mRNA upstream 61533 26276415 ~ 26286155 (-) False LOC120558305
XM_039800444.1 mRNA upstream 71666 26286548 ~ 26315880 (-) True LOC120559019
TU70950 other downstream 240821 25947381 ~ 25972172 (-) False acot7
TU70611 other downstream 1459906 24750440 ~ 24753087 (-) False phactr3a
TU70430 other downstream 1873537 24335149 ~ 24339456 (-) False masp2
TU70089 other downstream 2893309 23308500 ~ 23319684 (-) True G52501
XR_005639228.1 other downstream 2994093 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639354.1 other upstream 431932 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other upstream 431932 26646814 ~ 26658321 (-) False dcp1a
XR_005639353.1 other upstream 431932 26646814 ~ 26658321 (-) False dcp1a
XR_005639352.1 other upstream 431932 26646814 ~ 26658321 (-) False dcp1a
TU71391 other upstream 577570 26792452 ~ 26795028 (-) True selenok

Expression Profile