RNA id: XM_039800525.1


Basic Information

Item Value
RNA id XM_039800525.1
length 3751
RNA type mRNA
GC content 0.48
exon number 23
gene id emc1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26136998 ~ 26147245 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAACTTCCGACTTCCTCCTTCTCTTGAAGAGCAAGCTAAAGCTACTGCTGCAATGGCAAAGCTAATTTGGTTGTGCCTGCAATTTATCATGTTATACAGCACTGTCGAGGCTGTGTTTGAGGATCAAGTAGGGAAATTTGACTGGAGGCAGCAGTATGTTGGCAAGGTTCGCTTTTCCCACTTCGACTCACATGTGCAGTCATCCAAAAAGGTGCTTGTGGCAACAGAGAGCAATGTGTTTGCTTCACTCAATACCAGGACTGGAGAACTCtTCTGGCGGCATGTAGATAAGACTGGGCCGGAGGGAAACATTGACGCTCTTCTGCAACATGGACAAGATGCGGTGCTGGTGGTTGGTAATGGCCGCCTACTGCGCTCCTGGGAGATAAATATTGGTGGTTTGAACTGGGAGGTTGTGCTGGACTCTGGCAGTTTCCAGTCGGCATGTTTAGTTGGACAGCAAGACATAGTGAAACACGTGGCTGTTTTGAAGAAAACTGTCCTCTCTCTGCATTACCTGTCTAATGGTCATCAGAAATGGATAGAGAATCTACCAGAAAGTGAAACCGTGGATTACCAGGCTGTGTATTCTGGTGGTAATGGTGAAGTGTATGCACTGGGGGTTGTCCCCCATTCCCACATTGCAATTGTTGCTTACAGTTTGGAGGATGGAGAGATAATCAAGCAGATCTCAGTCGAAGCTCCATGGCTGTCCAACATACAGGCCAGCTGTTCAGTGATCGACCAGGGGATGTTGACTTGTGTGGACTCTGCAACAGTATCCCTGTACATGCTTGACTTGCACCTGCAGTCCCAGATGACACAGATCCCCCTGCAGTCGCTGGGACTTGAAGTCACGCCTGGTTTCCAGCCAGTACTGGTGTCCACCCAGCCCAACCCAGCTCGCCCACCACTGTCGGAGTTCCTCCTTCAGCTTGGGCCTGAACACCACCTGCTTCTCCAGCTCAACAATGGTCACATAGTTACACTCAGGGATTTCAAGCCTGCCATGCTGGTTTCATTTGCTACCACTGGAGAGAAGACTGTTGCTGCTGTCATGTCGCCCAAGAATAAAACTGCTTGCAGTATTAACCTCTTTAGTGGAGAAACTGGACGCAGACTTCTAGACACAACACTGATTTTCAATATGGATCCTAATGGTGGGAAACCAGAGAAGCTGTATGTACAAGCATTCCTAAAGAAAGACGACTCAGTTGGCTACAGGGTCATGGTGCAGACAGAAGACCACACACTCACTTTCATCCAGCAGCCAGggcGTGTAATGTGGACGAGAGAGGAGGCCCTGTCAGATGTGGTGACAATGGAAATGGTGGATCTGCCTCTCACAGGAACACAGGCAGAGCTGGAGGGGGAGTTTGGCAAAAAGGCTGCCATACAAGACGGCCTGATGTCCATGGTGCTTAAGAGGCTCTCCTCTCAGCTTATCTTGCTGCAAGCTTGGATTTCTCATCTCTGGAAGCTGTTCTACGATGCACGGAAGCCTCGCAGTCAAGTCAAAAATGATGTGACCATTGAGAACCTCTCCAGAGACGAGTTCAACCTGCAGAAGATGATGGTTATGGTTACTGCATCTGGGAAGCTCTTTGGGATTGACAGCAAGACCGGCAGCATTTTATGGAGGCACTACCTGAACAACATCCCATCTAATCCAGCTTTCAAACTAATGGTGCAACGGACCACGGCACACTTCCCTCATCCGCCACAGTGCACACTGCTCATCAAAGACAAGGACACAGGCCTGGCCACACTCCATGTGTTTAATCCCATTTTTGGAAAAACGAGTCACATCAGCCCACCTGCCCTGACTCAGCCAATACTTCAGTCACTCATGCTGCCTCTCATGGACCAGGATTATGCAAAGGTCTTACTTCTTGTTGATGACCAGTACAAGGTGTCTGCTTTTCCCTCTACAAAGAATGTACTACAGCAGCTCCAGGAGATGGCCTCATCCATATTCTTTTATCTTATTGACTCCAGCCAGGGAAGACTTTCTGGCTACAGGCTACGAACGGACTTGTCGACTGAGCTGATCTGGGAGGTTGTCGTCCCAACCGAGGTCCAGAGGATTGTCTCAGTCAAAGGCAAAAGGCCCAATGAGCATGTACACTCCCAGGGCAGAGTGATGGGAGACCGTAGTGTTCTATATAAGTACCTGAACCCAAATCTCCTGGCCGTGGTGCTTGAGAGCACAGACTTGCATCAGGAGCGAAGCTTTGTCGGGATCCTCCTGATTGATGGCGTGACTGGTCGCATCATCCACGAGGCTGTTCAGAGAAAGGCCAGAGGACCAGTGCATGTTGTGCACTCTGAAAACTGGGTGGTGTACGAATACTGGAGCACCAAGTCTCGCAGGAACGAGTTCTCTGTAATTGAACTGTATGAAGGGATGGAGCTCTACAACAGCACCGTGTTCAGCTCGCTGGATCGGCCACACGCTCCTCAGGTGCTTCAGCAGTCTTACATTTTCCCCTCCTCCATTTCCACCATGGAGGCCACACTGACCGAGAAGGGCATCACCAGCCGCCATCTGCTCATTGGCTTGCCATCTGGAGGGATTTTGTCACTACCCAAGATGTTCCTTGACCCTCGGAGGCCAGAAATAGTAACTGAGCAAAGCCGGGAAGAGAACCTGATACCGTATGCACCAGAGCTGCTGATCCGTACAGAGTGGTTCATCAACTACAATCAGACTGTATCAAGAGTGCGAGGAATTTACACTGCCCCCTCTGGACTGGAGTCAACCTGTCTGGTGGTGGCATATGGTCTCGACATCTACCAGACACGCGTCTATCCCTCAAAGCAGTTTGACGTACTTAAAGACGACTATGACTACATGCTGATCAGTAGCGTTCTCCTCGCCCTTTTCTTTGCCACCATGATCAGCAAACGCCTGGCAGAAGTCAAACTGCTTAACCGGGCCTGGCGGTAAAGGATTGGTCAAAATCCCATCTCTTACAGCCCCGAGGCTGCACAAAGGACCTCAGCCCGAGGAGATGAGACGGCTGAGACCATGCCTGTAGAAGAACACAGGCCAAAGATCAATAAGGCCCATAAGGAACTGCAGGGGTGAGGGGACAGCGGGGTGGGGGTGAAAGGAGGGATTAGAAGAGGttttatgtgttgttgtttttttaacttatttttgCAAGCACAAGGAATTATTTCATagtaaaataacttttttttttgtgcaatgtCATTTTGATTAAATGTTTAACACATAACTAATTCCAAATGAATAATACAGATTTGGATTTAATAAATTGTGGAGTTTGGAAATTCCCACACATGTGAAAGTTGGATACTTAAGCAATGTTAGTTTCTTCCAAAATAGTTTGAGGCATTTACTCTTCATTAGATACTTCATTAGACTACTCTAATGGAGAGTGAATACATATTGAGGTTTGAGAAAGGCGATACAGAAGACATGCAACACACGTGAGCATGATTTGATTCTTTTAGCTTGCTGAATCACGGTGATGCCCAGATGAAGAACTGTATAAAGTGTGAGAAGATCATGCAGAATGGACAAGAAATGGTCATTTATGCTTTCCTAAAGACTTTCCCACCAATGGCACTGTCACACTGTTGTCACCATCACATGCTCAACAAAGGAAAATGACCCATCAGTAGCCTCTATTTTCTGTACATCAATCATCTTGCAGCTCATTCGTGTGAGCAGTTTTTATCCACTAATGGCTCCATTAAAATTTCTTCTTGTCTCAGAA

Function

GO: NA

KEGG:

id description
K23562 EMC1; ER membrane protein complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71059 lncRNA downstream 348 26134261 ~ 26136831 (-) True G53161
TU70968 lncRNA downstream 88766 26035585 ~ 26048413 (-) True G53095
TU70969 lncRNA downstream 88766 26035585 ~ 26048413 (-) False G53095
XR_005639232.1 lncRNA downstream 269657 25832432 ~ 25867522 (-) True LOC120559222
TU70908 lncRNA downstream 336002 25799425 ~ 25801177 (-) True G53052
TU71061 lncRNA upstream 38182 26185427 ~ 26212141 (-) True G53162
TU71080 lncRNA upstream 38611 26185856 ~ 26189714 (-) False G53179
TU71079 lncRNA upstream 41092 26188337 ~ 26189714 (-) True G53179
TU71086 lncRNA upstream 47253 26194498 ~ 26195171 (-) True G53185
TU71095 lncRNA upstream 60444 26207689 ~ 26208140 (-) True G53194
XM_039801278.1 mRNA downstream 17845 26109567 ~ 26119334 (-) True LOC120559533
XM_039801277.1 mRNA downstream 35783 26096325 ~ 26101396 (-) True taf10
XM_039799752.1 mRNA downstream 41602 26078812 ~ 26095577 (-) True ppih
XM_039799750.1 mRNA downstream 60532 26071585 ~ 26076647 (-) False ybx1
XM_039799534.1 mRNA upstream 77884 26225129 ~ 26226447 (-) True LOC120558512
XM_039800441.1 mRNA upstream 81645 26228890 ~ 26232414 (-) True LOC120559017
XM_039799223.1 mRNA upstream 129170 26276415 ~ 26286289 (-) True LOC120558305
XM_039799224.1 mRNA upstream 129170 26276415 ~ 26286155 (-) False LOC120558305
XM_039800444.1 mRNA upstream 139303 26286548 ~ 26315880 (-) True LOC120559019
TU70950 other downstream 165007 25947381 ~ 25972172 (-) False acot7
TU70611 other downstream 1384092 24750440 ~ 24753087 (-) False phactr3a
TU70430 other downstream 1797723 24335149 ~ 24339456 (-) False masp2
TU70089 other downstream 2817495 23308500 ~ 23319684 (-) True G52501
XR_005639229.1 other downstream 2918279 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU71098 other upstream 65748 26212993 ~ 26214882 (-) True G53196
XR_005639354.1 other upstream 499569 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other upstream 499569 26646814 ~ 26658321 (-) False dcp1a
XR_005639353.1 other upstream 499569 26646814 ~ 26658321 (-) False dcp1a
XR_005639352.1 other upstream 499569 26646814 ~ 26658321 (-) False dcp1a

Expression Profile