G65890 (vsig10)


Basic Information

Item Value
gene id G65890
gene name vsig10
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30539817 ~ 30540839 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU88147
ACTCCACcacatttttaaaatggttccaGTCTAGAGTTGCATTCTAGACTGCGATAGTCATAGTTAATCTGTAAATGCTATGTGCAGAGTGGGAATGTACGTAAATCAATAAGTTATGAATGACCAAATCCATTGTCACATCTCATTTAGTTTAAGCAGCTTCATTTACTGCACACATCTCAACATCAGAGCAACATATTCAGAATGCTCTACAGacaaatcaataataaaaaacatgcttacaaaaattaaaaaccctgtttaaaaaacaattaaaaaaattaagagAGCTGAGCTGATGTGTCTTCCACCGATTCTGTTCATATTGTCATTGGGAGTGAATAGTATTTacctaaaataaaaacacttctCTCTAAAACACCCAATACCTAAAATGTTAAAAGATCCACTGGCTCTTCTCTCTGTACAGTATCTTCCTGCTGCTGTGGGCTTGGGTCAGCTGTTTCTGCATCCTCATGATCGCTTGATGGGATCCGATGTATCTGGACGAGCGTTGTATGATGTCCGTTGGTTAACGGAGGCAGCCGGGGAACGGCATCTTGAAAGATCTGCTCGTCGTCTGAATCCACCAGACTTAGCACGTCTCCATTGTCCTCCATTTGCCTAGACAGCAGAAACATTATTGGGACATTAGAGTGTACCTGCAGGAGCTATCTAAGAAATACCTGAGACTCTTTTACGCTAGCCTGGCATTGTAAGACAAATGCGCAAATGAAACATGAGCTTGCAGATTAGTCTGGCTCTCAGGCTACTTTTACAAAGCTATATCATCTAATCTTTActggtaattttttttatttcattttatttttcatgttattatttatattatatttcttGAATTTTTGGtttgtgagtgagtatgtgtgtatgtccttgGTAACTTGCTACTTGTTGCTTGTAACAG

Function

symbol description
vsig10 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in EVL; ectoderm; otic vesicle; peripheral olfactory organ; and pharynx. Orthologous to human VSIG10 (V-set and immunoglobulin domain containing 10).

NR:

description
PREDICTED: V-set and immunoglobulin domain-containing protein 10 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88147 True 928 lncRNA 0.38 2 30539817 30540839

Neighbor

gene id symbol gene type direction distance location
rfc5 rfc5 coding upstream 9434 30524069 ~ 30530383 (+)
spring1 clg12h12orf49,c21h12orf49,LOC101487986,LOC104923683,LOC102233336 coding upstream 272744 30263603 ~ 30267073 (+)
tesca tesc coding upstream 317292 30197629 ~ 30222525 (+)
zgc:112294 LOC104923678,LOC103369777,LOC100697282 coding upstream 465220 30071764 ~ 30074597 (+)
selenoe LOC104961905,LOC101066385,LOC105931211,LOC108246935,LOC103369776 coding upstream 468262 30069411 ~ 30071555 (+)
pebp1 pebp1 coding downstream 14174 30555013 ~ 30557814 (+)
suds3 suds3 coding downstream 107534 30648373 ~ 30657730 (+)
srrm4 srrm4 coding downstream 228586 30769425 ~ 30835681 (+)
hspb8 hspb8 coding downstream 297387 30838226 ~ 30849481 (+)
znrf3 znrf3 coding downstream 387907 30928746 ~ 31007297 (+)
G65883 ksr2 non-coding upstream 108076 30431386 ~ 30431741 (+)
G65881 NA non-coding upstream 118371 30417513 ~ 30421446 (+)
LOC120559990 NA non-coding upstream 151998 30387164 ~ 30387819 (+)
G65792 NA non-coding upstream 316741 30206616 ~ 30223076 (+)
G65777 NA non-coding upstream 387730 30151772 ~ 30152087 (+)
G65951 NA non-coding downstream 213520 30754359 ~ 30837774 (+)
G65958 xbp1 non-coding downstream 365517 30906356 ~ 30909470 (+)
G66015 NA non-coding downstream 589202 31130041 ~ 31154168 (+)
G66072 NA non-coding downstream 760671 31301510 ~ 31301746 (+)
G66071 NA non-coding downstream 770104 31310943 ~ 31311447 (+)
LOC120560820 NA other upstream 288298 30246887 ~ 30251519 (+)
fbxo21 fbxo21 other upstream 327709 30186848 ~ 30212108 (+)
ubac1 ubac1 other upstream 1188061 29344580 ~ 29351756 (+)
mboat4 NA other upstream 1690346 28845626 ~ 28849471 (+)
G65084 lipg other upstream 3168858 27205234 ~ 27370959 (+)
G65899 taok3 other downstream 33247 30574086 ~ 30578159 (+)
LOC120561064 NA other downstream 316741 30857580 ~ 30893280 (+)
dmrt3a dmrt3 other downstream 1266956 31807795 ~ 31811553 (+)
adamts3 adamts3,LOC100699019,LOC101479253,LOC102313231 other downstream 1491737 32032576 ~ 32209534 (+)
G66231 NA other downstream 1585454 32126293 ~ 32136966 (+)

Expression


Co-expression Network