suds3 (suds3)


Basic Information

Item Value
gene id suds3
gene name suds3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30648373 ~ 30657730 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803983.1
ACTCGGAGGTCCTGCCAGTTGTAGGCGCTGTTCCAAGCAAGCTGCAAAACACAAATcgattgtttattttgtgtttgtttacatttttcaagCGAACAAATGGCTTCGACTTTGCTATCACCTATGGTGGATTATTACAACGATGAAGAAGAACTTGATAGCGTGGAAGACGACGATGACCGGAGTTTCAGGGGAAGAGACTCAGAAGAAGACACGGAAGATGCCAGTGAAACAGATCTTGCCAAGCACGACGAGGATGACTATGTTGAAATCAAAGAGCAAATGTACCAAGACAAACTGGCCTCTCTGAAAAGACAGTTGCAGCAATTACAAGAAGGTACACTGCAGGAGTATCAGAAGAGGATGAAGAAGCTGGACCAGCAGTACAAAGAGAGACTCCGAAATGCAGATCTGTTTCTCCAGCTTGAGACAGACCAGGTGGAGAGGAACTACATCAAGGAGAAGAAGGCAGCGGTGAAGGAGTTTGACGATAAAAAGGTTGAACTGAAGGAAAACCTAATTGCAGAgttggaggagaagaagaagatgatcgAGAATGAAAAATTAACAATGGAGTTGACAGGCGATTCAATGGAGGTAAAACCTATCATGACTCGGAAGCTGAGGAGACGGCCCAATGATCCAGTCCCAATACCAGATAAACGGAGAAAACCTGCACCAGCTCAGCTAAATTATTTGTTAACAgatgaacagataatggaagatCTAAGAACACTTAATAAGCTCAAGTCACCAAAACGGCCGGTGTCTCCCTCGTCTCCAGAGCACGTCCCCTCCGCTCCCATGGAGAACCCCTCCCAGCGGTATGAGGCCCGAATCGAGGAGGGGAAGCTTTACTACGACAAAAGATGGTACCACAAGAGCCAGGCCATCTATCTGGAgtcaaaggacaacacaaagaTTAGCTGTGTCATCAGCTCAGTTGGGACCAATGAGATTTGGGTGAGGAAGACGAGCGACAGTACAAAGATGAGGATCTACCTGGGACAGCTGCAGAGGGGAGCGTTTGTCATCCGTCGACGGTCGGCTGCGTGAAACATTACCCCACCCATCCCCTCCCCACCCAACCCCCATCTGTTCATCTATCCATTCATTCACCGGCTCCTTCATCCTCTATTTCTCTATTTGGTGCATCTCAATTGAGTTATTCTTCATCATATACACTACCCCCCCCCCAATTATAGaagcatacacagacacacacacacacacacacacacacacacacacacacgcagtctTCCGTGGCCAAAAATAACTCATCTGATTTGATCTGTTTGATCTGGTACAGTAAAAGGGGTCATATACGCAACTGACTGTTTTCCAGCATTATTTGTCACTatgtggcatgtgtgtgtgtgtgcaggtagtTTGTGATCATAAAGGAGCCTTCTTTGATTTGTGTCTCGTGCTGTAAACAGAAATCCTTTCTACACCATGCAgtcttattttacatttatcatTAAGTTATTTTTCTTCAACAGCATCATGTCGCCCCACAGAAACTGTCTTCAAGCCTTTGTAACTGTCTCACTGGCGACATGTAACGAAGCAAGCACTGAAAAACAGATGAGGAATTGCTTTAGGTTTTGGCTGATTATCATGAATCCCATGACTGAAGGAAGTTACCGTTTCCTTATACCTGGAGTCATGCCATTTTCAAAAGAACATGCCTTCTGTCACGGTCATCAAGTAATGGCTGCTTGCTGTGCTGAAGGTTTGTCCTAATAACATGTTCAAAAGTCCTATCTATTAAACTCTAAATttcttatttgaaaaaaaataaatgtattttgagGTTTTATGTTATTTCTTTGCCTTTTATGTGGTCCTCTCCATGTAATTCAATTGCATTTGCATGTGGAGCACTAAGTTTACTGTTGATGTGTACTGTATtccattttattaaaaatgttttctgcatttta
>XM_039803984.1
GTTTAACGTTACATTGGCTTAACGTCTTCAGTGCTGATAGAAAACTGAGCCCACGTTCAACGATAATAATACACACGCAATTGTTTACATGCTAGCTAACTAACAATACTAACGTTACGCGTGTGGCATCAATCAGTTTTTACCACATTATTAGGCAAATTGGCACTACgttattgtataaaatgtaacCGTAAATTAAGAAATCCAGGCATTTTATAACCCATCAGGATGAATACACAGTTTAACTAACTGCTATTCCAAATGGGGTTTATAGCGTTAATTAGCCAACTAGCTACGTGACGTTAGCTCCGAGCATTGACAGGTCGGCAGGCAAGCGAAACCCTGCGTGCTGTGTCCACTGCACTGCCCTCTTCACACCATTCAGTGAGACAGGACGGATAGcagtgaaagagaaagaaagaccaGAGGAAAACAAGGCGATGACAACACTACAAGACACGGAAGATGCCAGTGAAACAGATCTTGCCAAGCACGACGAGGATGACTATGTTGAAATCAAAGAGCAAATGTACCAAGACAAACTGGCCTCTCTGAAAAGACAGTTGCAGCAATTACAAGAAGGTACACTGCAGGAGTATCAGAAGAGGATGAAGAAGCTGGACCAGCAGTACAAAGAGAGACTCCGAAATGCAGATCTGTTTCTCCAGCTTGAGACAGACCAGGTGGAGAGGAACTACATCAAGGAGAAGAAGGCAGCGGTGAAGGAGTTTGACGATAAAAAGGTTGAACTGAAGGAAAACCTAATTGCAGAgttggaggagaagaagaagatgatcgAGAATGAAAAATTAACAATGGAGTTGACAGGCGATTCAATGGAGGTAAAACCTATCATGACTCGGAAGCTGAGGAGACGGCCCAATGATCCAGTCCCAATACCAGATAAACGGAGAAAACCTGCACCAGCTCAGCTAAATTATTTGTTAACAgatgaacagataatggaagatCTAAGAACACTTAATAAGCTCAAGTCACCAAAACGGCCGGTGTCTCCCTCGTCTCCAGAGCACGTCCCCTCCGCTCCCATGGAGAACCCCTCCCAGCGGTATGAGGCCCGAATCGAGGAGGGGAAGCTTTACTACGACAAAAGATGGTACCACAAGAGCCAGGCCATCTATCTGGAgtcaaaggacaacacaaagaTTAGCTGTGTCATCAGCTCAGTTGGGACCAATGAGATTTGGGTGAGGAAGACGAGCGACAGTACAAAGATGAGGATCTACCTGGGACAGCTGCAGAGGGGAGCGTTTGTCATCCGTCGACGGTCGGCTGCGTGAAACATTACCCCACCCATCCCCTCCCCACCCAACCCCCATCTGTTCATCTATCCATTCATTCACCGGCTCCTTCATCCTCTATTTCTCTATTTGGTGCATCTCAATTGAGTTATTCTTCATCATATACACTACCCCCCCCCCAATTATAGaagcatacacagacacacacacacacacacacacacacacacacacacacgcagtctTCCGTGGCCAAAAATAACTCATCTGATTTGATCTGTTTGATCTGGTACAGTAAAAGGGGTCATATACGCAACTGACTGTTTTCCAGCATTATTTGTCACTatgtggcatgtgtgtgtgtgtgcaggtagtTTGTGATCATAAAGGAGCCTTCTTTGATTTGTGTCTCGTGCTGTAAACAGAAATCCTTTCTACACCATGCAgtcttattttacatttatcatTAAGTTATTTTTCTTCAACAGCATCATGTCGCCCCACAGAAACTGTCTTCAAGCCTTTGTAACTGTCTCACTGGCGACATGTAACGAAGCAAGCACTGAAAAACAGATGAGGAATTGCTTTAGGTTTTGGCTGATTATCATGAATCCCATGACTGAAGGAAGTTACCGTTTCCTTATACCTGGAGTCATGCCATTTTCAAAAGAACATGCCTTCTGTCACGGTCATCAAGTAATGGCTGCTTGCTGTGCTGAAGGTTTGTCCTAATAACATGTTCAAAAGTCCTATCTATTAAACTCTAAATttcttatttgaaaaaaaataaatgtattttgagGTTTTATGTTATTTCTTTGCCTTTTATGTGGTCCTCTCCATGTAATTCAATTGCATTTGCATGTGGAGCACTAAGTTTACTGTTGATGTGTACTGTATtccattttattaaaaatgttttctgcatttta
>XM_039803985.1
GTTGGAAAAGTAACGGAAGTCCGCGATTATTGCATAAATTTAGTTATTTTTAGTGCAGCTTTTTAAAGTGATCTACAGATTAAGCTCGACTGGAAACAGTTTTTCTTAGCACTTCCTAAATCAAATTTTACCTGCCCGTTCCCAACGCTGGAAAGCTAACCCAATACGAGCCACACGCAGTTAGCTTACTAGCTAACGTAACATAACAAGTCAGCTAACCCGACTACCGCCAATCAAGTGTCTGCCCAGGACAGAACATTTTCAGAAGCAGACACGGAAGATGCCAGTGAAACAGATCTTGCCAAGCACGACGAGGATGACTATGTTGAAATCAAAGAGCAAATGTACCAAGACAAACTGGCCTCTCTGAAAAGACAGTTGCAGCAATTACAAGAAGGTACACTGCAGGAGTATCAGAAGAGGATGAAGAAGCTGGACCAGCAGTACAAAGAGAGACTCCGAAATGCAGATCTGTTTCTCCAGCTTGAGACAGACCAGGTGGAGAGGAACTACATCAAGGAGAAGAAGGCAGCGGTGAAGGAGTTTGACGATAAAAAGGTTGAACTGAAGGAAAACCTAATTGCAGAgttggaggagaagaagaagatgatcgAGAATGAAAAATTAACAATGGAGTTGACAGGCGATTCAATGGAGGTAAAACCTATCATGACTCGGAAGCTGAGGAGACGGCCCAATGATCCAGTCCCAATACCAGATAAACGGAGAAAACCTGCACCAGCTCAGCTAAATTATTTGTTAACAgatgaacagataatggaagatCTAAGAACACTTAATAAGCTCAAGTCACCAAAACGGCCGGTGTCTCCCTCGTCTCCAGAGCACGTCCCCTCCGCTCCCATGGAGAACCCCTCCCAGCGGTATGAGGCCCGAATCGAGGAGGGGAAGCTTTACTACGACAAAAGATGGTACCACAAGAGCCAGGCCATCTATCTGGAgtcaaaggacaacacaaagaTTAGCTGTGTCATCAGCTCAGTTGGGACCAATGAGATTTGGGTGAGGAAGACGAGCGACAGTACAAAGATGAGGATCTACCTGGGACAGCTGCAGAGGGGAGCGTTTGTCATCCGTCGACGGTCGGCTGCGTGAAACATTACCCCACCCATCCCCTCCCCACCCAACCCCCATCTGTTCATCTATCCATTCATTCACCGGCTCCTTCATCCTCTATTTCTCTATTTGGTGCATCTCAATTGAGTTATTCTTCATCATATACACTACCCCCCCCCCAATTATAGaagcatacacagacacacacacacacacacacacacacacacacacacacgcagtctTCCGTGGCCAAAAATAACTCATCTGATTTGATCTGTTTGATCTGGTACAGTAAAAGGGGTCATATACGCAACTGACTGTTTTCCAGCATTATTTGTCACTatgtggcatgtgtgtgtgtgtgcaggtagtTTGTGATCATAAAGGAGCCTTCTTTGATTTGTGTCTCGTGCTGTAAACAGAAATCCTTTCTACACCATGCAgtcttattttacatttatcatTAAGTTATTTTTCTTCAACAGCATCATGTCGCCCCACAGAAACTGTCTTCAAGCCTTTGTAACTGTCTCACTGGCGACATGTAACGAAGCAAGCACTGAAAAACAGATGAGGAATTGCTTTAGGTTTTGGCTGATTATCATGAATCCCATGACTGAAGGAAGTTACCGTTTCCTTATACCTGGAGTCATGCCATTTTCAAAAGAACATGCCTTCTGTCACGGTCATCAAGTAATGGCTGCTTGCTGTGCTGAAGGTTTGTCCTAATAACATGTTCAAAAGTCCTATCTATTAAACTCTAAATttcttatttgaaaaaaaataaatgtattttgagGTTTTATGTTATTTCTTTGCCTTTTATGTGGTCCTCTCCATGTAATTCAATTGCATTTGCATGTGGAGCACTAAGTTTACTGTTGATGTGTACTGTATtccattttattaaaaatgttttctgcatttta

Function

symbol description
suds3 Predicted to enable histone deacetylase binding activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Sin3-type complex. Orthologous to human SUDS3 (SDS3 homolog, SIN3A corepressor complex component).

NR:

description
PREDICTED: sin3 histone deacetylase corepressor complex component SDS3 isoform X1

GO: NA

KEGG:

id description
K19201 SUDS3, SAP45; Sin3 histone deacetylase corepressor complex component SDS3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803983.1 False 1949 mRNA 0.43 12 30648373 30657730
XM_039803984.1 True 2194 mRNA 0.43 12 30648924 30657730
XM_039803985.1 False 2009 mRNA 0.43 12 30648632 30657730

Neighbor

gene id symbol gene type direction distance location
pebp1 pebp1 coding upstream 90559 30555013 ~ 30557814 (+)
rfc5 rfc5 coding upstream 117990 30524069 ~ 30530383 (+)
spring1 clg12h12orf49,c21h12orf49,LOC101487986,LOC104923683,LOC102233336 coding upstream 381300 30263603 ~ 30267073 (+)
tesca tesc coding upstream 425848 30197629 ~ 30222525 (+)
zgc:112294 LOC104923678,LOC103369777,LOC100697282 coding upstream 573776 30071764 ~ 30074597 (+)
srrm4 srrm4 coding downstream 111695 30769425 ~ 30835681 (+)
hspb8 hspb8 coding downstream 180496 30838226 ~ 30849481 (+)
znrf3 znrf3 coding downstream 271016 30928746 ~ 31007297 (+)
si:dkey-174n20.1 LOC104959464,LOC104920648,LOC101478912,LOC102310039,LOC100693286 coding downstream 460095 31117825 ~ 31121911 (+)
LOC120561479 NA coding downstream 464828 31122558 ~ 31124674 (+)
G65890 vsig10 non-coding upstream 107534 30539817 ~ 30540839 (+)
G65883 ksr2 non-coding upstream 216632 30431386 ~ 30431741 (+)
G65881 NA non-coding upstream 226927 30417513 ~ 30421446 (+)
LOC120559990 NA non-coding upstream 260554 30387164 ~ 30387819 (+)
G65792 NA non-coding upstream 425297 30206616 ~ 30223076 (+)
G65951 NA non-coding downstream 96629 30754359 ~ 30837774 (+)
G65958 xbp1 non-coding downstream 248626 30906356 ~ 30909470 (+)
G66015 NA non-coding downstream 472311 31130041 ~ 31154168 (+)
G66072 NA non-coding downstream 643780 31301510 ~ 31301746 (+)
G66071 NA non-coding downstream 653213 31310943 ~ 31311447 (+)
G65899 taok3 other upstream 70214 30574086 ~ 30578159 (+)
LOC120560820 NA other upstream 396854 30246887 ~ 30251519 (+)
fbxo21 fbxo21 other upstream 436265 30186848 ~ 30212108 (+)
ubac1 ubac1 other upstream 1296617 29344580 ~ 29351756 (+)
mboat4 NA other upstream 1798902 28845626 ~ 28849471 (+)
LOC120561064 NA other downstream 199850 30857580 ~ 30893280 (+)
dmrt3a dmrt3 other downstream 1150065 31807795 ~ 31811553 (+)
adamts3 adamts3,LOC100699019,LOC101479253,LOC102313231 other downstream 1374846 32032576 ~ 32209534 (+)
G66231 NA other downstream 1468563 32126293 ~ 32136966 (+)
G66256 slc4a5,LOC102211952,LOC101484802 other downstream 1664777 32322507 ~ 32329990 (+)

Expression


Co-expression Network