G66521 (bmp3,LOC102780994)


Basic Information

Item Value
gene id G66521
gene name bmp3,LOC102780994
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33349506 ~ 33350553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU89020
GTCACAAGTTACATATGTCTATGGGCCTAATTTCTCCTGTTTTATTTGAATTAAGTTTAGAGGCCTGTTTTCCCAATTACTGACCCTCAGGTTGGCAACCATTTCAGAAGTGCTGTACAAGAGTCTCACCTTTGGCATGGGGAATTGGCAGGACCCTGAGCAGTAGTAAGCATCAAACGACTTGGGTGATATAATCCATTCACTCCATCCAATGTCAGCAAAGTCCACTTTCAGGTATCTCCGAGCGCAGTTCCTAGGCTCGTTCCACTGCTTCTTTCGTGCCTTTTTGATTGTCTGCTCATCAAACTGCAGCAGGGGCATCTTGTGCCGCTGATTCTTGCGTGTCTTTTTACGTGGCCGACGGGGCTGCTTGTTTTCAAAAGGTTCGTATGGACTCGTCTCATCCCAACCGGTCGTCTTGTACGGATACTCGTGCCCGGGAAGTTCGTTGTTTTGCAATGGGAGCAGAACGTTCACCGAGCGCTTGTGTCTGGGCTGCGGCTGCTCTTCTTCAGTGTTGTTTCGCTCACGCAGTCCCAGTTTTTGGAAGCTGTGTGAAATGGAGCCTTCCCCTCCCACTGAGTGGTGTCTCTGGAGGGTAGCTACCACACTTTCAGGCTCTGAAATGGCAGAGTCATTGGCGTAGACCAGGATGTAGGGTGAGCGGTCAGACAGGAGCTTCTTCCATTGCTGGGGCCCTTGGGAGGCCACATCGATCCCAATAAGCAGCTCGTCGTGGTGTTTGGCCTGGTTGACCACACGAGTAACGTCCTTCCACTGCCAAGATATGAAGTCCCTGTAGAGGGTCGACACATTGATCTGAAAGTGTCCTAGAGTCCTTATCTTGTTATCTACAGAGGCAAAACTCCAGATGACCATGTGGATGTGGTTGTGCCTCCGGGGGCCGTGGCGTCCACAGCTTTTGGACCTGGAGCAGCCCTGGGTGCTGTTCTGAAGGTCTCCAATGTAATAATGAAGAGTGGCAGACAGAACGTCTTCTGACTTGGTGAGGGAGGTGAGGTTGAAAATCTGCAGCTGCTTCTTGTTT

Function

symbol description
bmp3 Predicted to enable cytokine activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including fin; heart; otic vesicle; paraxial mesoderm; and pharyngeal arch. Orthologous to human BMP3 (bone morphogenetic protein 3).

NR:

description
PREDICTED: bone morphogenetic protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89020 True 1048 lncRNA 0.51 1 33349506 33350553

Neighbor

gene id symbol gene type direction distance location
prkg2 prkg2 coding upstream 5491 33303339 ~ 33344015 (+)
rasgef1ba rasgef1b coding upstream 55405 33156914 ~ 33294101 (+)
LOC120560373 LOC106570904 coding upstream 97099 33248404 ~ 33252407 (+)
wdfy3 NA coding upstream 278996 32957229 ~ 33070510 (+)
rusc2 rusc2,LOC104944866 coding upstream 447959 32854714 ~ 32901547 (+)
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding downstream 428454 33779007 ~ 33790810 (+)
cnot6l cnot6l coding downstream 819922 34170475 ~ 34187620 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding downstream 922394 34272947 ~ 34280255 (+)
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding downstream 930426 34280979 ~ 34289653 (+)
LOC120560630 set,LOC102777863,LOC107083999,LOC100696975,LOC105014167 coding downstream 959547 34310100 ~ 34314260 (+)
G66498 NA non-coding upstream 209413 33139868 ~ 33140093 (+)
G66497 NA non-coding upstream 213489 33135790 ~ 33136017 (+)
G66496 NA non-coding upstream 221604 33127702 ~ 33127902 (+)
G66439 NA non-coding upstream 276784 33071537 ~ 33072722 (+)
G66340 NA non-coding upstream 611131 32720755 ~ 32738375 (+)
G66522 bmp3 non-coding downstream 1146 33351699 ~ 33352950 (+)
G66568 NA non-coding downstream 374967 33725520 ~ 33725782 (+)
G66571 NA non-coding downstream 405016 33755569 ~ 33755955 (+)
LOC120561187 NA non-coding downstream 419291 33769844 ~ 33772534 (+)
LOC120560041 NA non-coding downstream 525622 33876175 ~ 33877007 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 236690 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 736568 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 838769 32477038 ~ 32510737 (+)
mapk1 mapk1,LOC103371039,LOC107386038 other upstream 878679 32440375 ~ 32470827 (+)
G66263 LOC106536102 other upstream 979522 32364860 ~ 32369984 (+)
antxr2a antxr2 other downstream 167046 33517599 ~ 33603625 (+)
G66578 NA other downstream 425372 33775925 ~ 33776398 (+)
cfap157 NA other downstream 1163457 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 1415377 34765930 ~ 34773806 (+)
G66832 NA other downstream 1510946 34861499 ~ 34864690 (+)

Expression


Co-expression Network