LOC120560007


Basic Information

Item Value
gene id LOC120560007
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8431537 ~ 8434672 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802098.1
CTTTGTGGGACAAGTGAAATTGCCAGTGAAATCTTTGTAGTGCAAGAAGCCACATCCTCAAGATCAATTGAGAGCAGTTCATCCGGGTCAATAATGGATCATGGCATTAAAGCATCCTCAACTCTATATGTACTTTGGTATTCAAATCAGGATGTACAGGAAATTCTCTCGGATCAGCAAAATGATGGATCTCATGCCCTAGACGATACATCTCATGGTCACTCATTGCTGGCTAAGACCTCCTCCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAACTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCGCTCACTGCTGTCTGAGCCCTCCTCCCAGCCACCACTCACTCTGTTCTCACAACCACAAGAAATCCTGACTCTTCATGATGAACCATCACTCCCTCCATCTGCCCAGGAACCAATCATTATTTTTGATGAACAAGATGAGACAGTTACACAAAATCAGTCTCATGTATCAACACATCACCTCAGAGGACCTGTGGATGAGATTGATCTACAAAccatattgaaaaaaaatggtCAGCAAAGTTGACGGAAGCTTCTGTCCAACAAGCAACCAAATAAATGTGTGCAGGGATAATGTTTTACTGTGTAGCCTGCGGGCGTTCAAGCGTAGGTTCTTCAACCCTGAAGCAAAATTGGATGTTGTGTTTGTGGATGAAGATGACAATGGTGAAGGGGCAGTTGACGAAGGCGGCCCGACAAGAGAGTACCTAAGGCTGTTAATGAGGGCTGTCCACCAGTCCAATATCTTTGAGGGCCATGAGAAAGACCGGCAGTTGTCTCTTGATACTCAAGCTTTGCAGACTAAACTTTACACATGAGTGGCAAAAATGATTGCTGTGTGTGTCGTCCATGGAGGAGTCGGTCCACACTTCTTTTCCGAA
>XR_005639399.1
CACCAGTAGATGAGACCTCACCTCAAGTGGTTTCAGATCAGGTGGCATCCACATCCTCTGCCATATCCATTAATTCATTCCCATCGCTCTCAATTGCTCTAGTACAAGATGAGACTGTGGCTGAGAGTACCCAAGCTCAAAGTGTGGTTGCAAATCAGgcTCTTCAAGAATGGCGAGCAATACGTGCTCAGCAAGACCAGGAGTATAATACAAGTTTGTTGGTGGATCAGGAGAAGGAGAGGAAGAAACTAGCCTATCAGGCCTGTGAGGAAAGACGTCAAAAGGCTATTGAGGGAAGACGTCAGCGACTGTCTGCATGTGAGGAACCCTCAGATGGGGCCTTGATCAAATTTAAATATCCAAATGGACACATCAATGGGAGGAAATTCAGCTTGTCAGAGCCAATCCAGATCTTGTTTGACTTTGTGGGACAAGTGAAATTGCCAGTGAAATCTTTGTAGTGCAAGAAGCCACATCCTCAAGATCAATTGAGAGCAGTTCATCCGGGTCAATAATGGATCATGGCATTAAAGCATCCTCAACTCTATATGTACTTTGGTATTCAAATCAGGATGTACAGGAAATTCTCTCGGATCAGCAAAATGATGGATCTCATGCCCTAGACGATACATCTCATGGTCACTCATTGCTGGCTAAGACCTCCTCCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAACTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCGCTCACTGCTGTCTGAGCCCTCCTCCCAGCCACCACTCACTCTGTTCTCACAACCACAAGAAATCCTGACTCTTCATGATGAACCATCACTCCCTCCATCTGCCCAGGAACCAATCATTATTTTTGATGAACAAGATGAGACAGTTACACAAAATCAGTCTCATGTATCAACACATCACCTCAGAGGACCTGTGGATGAGATTGATCTACAAAccatattgaaaaaaaatggtCAGCAAAGTTGACGGAAGCTTCTGTCCAACAAGCAACCAAATAAATGTGTGCAGGGATAATGTTTTACTGTGTAGCCTGCGGGCGTTCAAGCGTAGGTTCTTCAACCCTGAAGCAAAATTGGATGTTGTGTTTGTGGATGAAGATGACAATGGTGAAGGGGCAGTTGACGAAGGCGGCCCGACAAGAGAGTACCTAAGGCTGTTAATGAGGGCTGTCCACCAGTCCAATATCTTTGAGGGCCATGAGAAAGACCGGCAGTTGTCTCTTGATACTCAAGCTTTGCAGACTAAACTTTACACATGAGTGGCAAAAATGATTGCTGTGTGTGTCGTCCATGGAGGAGTCGGTCCACACTTCTTTTCCGAA
>XR_005639400.1
CACCAGTAGATGAGACCTCACCTCAAGTGGTTTCAGATCAGGTGGCATCCACATCCTCTGCCATATCCATTAATTCATTCCCATCGCTCTCAATTGCTCTAGTACAAGATGAGACTGTGGCTGAGAGTACCCAAGCTCAAAGTGTGGTTGCAAATCAGgcTCTTCAAGAATGGCGAGCAATACGTGCTCAGCAAGACCAGGAGTATAATACAAGTTTGTTGGTGGATCAGGAGAAGGAGAGGAAGAAACTAGCCTATCAGGCCTGTGAGGAAAGACGTCAAAAGGCTATTGAGGGAAGACGTCAGCGACTGTCTGCATGTGAGGAACCCTCAGATGGGGCCTTGATCAAATTTAAATATCCAAATGGACACATCAATGGGAGGAAATTCAGCTTGTCAGAGCCAATCCAGATCTTGTTTGACTTTGTGGGACAAGTGAAATTGCCAGTGAAATCTTTGTAGTGCAAGAAGCCACATCCTCAAGATCAATTGAGAGCAGTTCATCCGGGTCAATAATGGATCATGGCATTAAAGCATCCTCAACTCTATATGTACTTTGGTATTCAAATCAGGATGTACAGGAAATTCTCTCGGATCAGCAAAATGATGGATCTCATGCCCTAGACGATACATCTCATGGTCACTCATTGCTGGCTAAGACCTCCTCCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAACTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCGCTCACTGCTGTCTGAGCCCTCCTCCCAGCCACCACTCACTCTGTTCTCACAACCACAAGAAATCCTGACTCTTCATGATGAACCATCACTCCCTCCATCTGCCCAGGAACCAATCATTATTTTTGATGAACAAGATGAGACAGTTACACAAAATCAGTCTCATGTATCAACACATCACCTCAGAGGACCTGTGGATGAGATTGATCTACAAAccatattgaaaaaaaatggtCAGCAAAGTTGACGGAAGCTTCTGTCCAACAAGCAACCAAATAAATGTGTGCAGGGATAATGTTTTACTGTGTAGCCTGCGGGCGTTCAAGCGTAGGTTCTTCAACCCTGAAGCAAAATTGGATGTTGTGTTTGTGGATGAAGATGACAATGGTGAAGGGGCAGTTGACGAAGGCGGCCCGACAAGAGAGTACCTAAGGCTGTTAATGAGGGCTGTCCACCAGTCCAATATCTTTGAGGGCCATGAGAAAGACCGGCAGTTGTCTCTTGATACTCAAGGTTTCATCTGTGTTGTATCATCttgcttttatttgtttaattttgccTTGATTTGTTAATTCTCAGTTAGGATTTTTCCATGATTCTtcatttctttgtctttttgtactTGATGTTTCGAAAGGTGCAATACTTATTATTCGTTGTAGCACTAATATTAATCATAGCATTTTAAGGTATTGCATTTTTAAGAAGCATTACAACAGAGCAATATTTTACGGTTATGTCTTTAATTTTAGCTTTGCAGACTAAACTTTACACATGAGTGGCAAAAATGATTGCTGTGTGTGTCGTCCATGGAGGAGTCGGTCCACACTTCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802098.1 False 1108 mRNA 0.49 4 8432952 8434672
XR_005639399.1 False 1529 transcript 0.48 9 8431537 8434672
XR_005639400.1 True 1762 transcript 0.45 9 8431537 8434666

Neighbor

gene id symbol gene type direction distance location
LOC120560868 NA coding upstream 28968 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 42419 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 227351 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 348163 8078302 ~ 8083374 (+)
mtmr3 mtmr3 coding upstream 353369 8055365 ~ 8078168 (+)
LOC120560486 LOC107690107 coding downstream 30499 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 375882 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 427298 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 487611 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 505157 8939829 ~ 8965106 (+)
LOC120560009 NA non-coding upstream 307 8428953 ~ 8431230 (+)
G60147 NA non-coding upstream 13687 8417642 ~ 8417850 (+)
G60120 NA non-coding upstream 58986 8372266 ~ 8372551 (+)
G60109 NA non-coding upstream 104584 8325053 ~ 8326953 (+)
G60080 NA non-coding upstream 118424 8302258 ~ 8313113 (+)
LOC120560008 NA non-coding downstream 69 8434741 ~ 8437598 (+)
trnaw-cca_2 NA non-coding downstream 9782 8444454 ~ 8444525 (+)
trnaw-cca_3 NA non-coding downstream 10946 8445618 ~ 8445689 (+)
trnaw-cca_4 NA non-coding downstream 12108 8446780 ~ 8446851 (+)
trnaw-cca_5 NA non-coding downstream 13273 8447945 ~ 8448016 (+)
LOC120560006 NA other upstream 3792 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 380197 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 553166 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 801357 7625736 ~ 7630180 (+)
susd1 susd1 other upstream 807822 7600092 ~ 7623715 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 556769 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 583219 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1492278 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 2291766 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 2313444 10748116 ~ 10752440 (+)

Expression


Co-expression Network