smyd1b (smyd1,LOC107394125,LOC100708974)


Basic Information

Item Value
gene id smyd1b
gene name smyd1,LOC107394125,LOC100708974
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24895062 ~ 24901099 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803214.1
GTGCAGTTGTCATTGAAGAGAACAGAGGGCACAGATTAGTGTATGAGTTTCTCAAGTACTCCATCGCTGCATTTAGCTTCTCTCTTCCACTGAAACACTCATCGGTTCACCACTGAATCTCAGGAACCAGTGCAGGAATCATGGAGAATGTGGCAATATTTGACTCACCTGGAAAGGGGAGAGGTCTGAAGGCTACCAAGGAGTTTTGGGCTGGAGACGTCATTTTTTCTGAGCCCAgtatttcagctgttgtgtttGACAGTCTATCAGAGCGTATTTGCCACAGCTGTTTCCGCAGACAAGACAAGCTACAGAGGTGTGGACAGTGCAAATTTGGTCATTATTGTGACCGAACTTGCCAGCGCGCCGGCTGGGCAGAACACAAGCAAGAGTGTGGGGCCATCAAAGCTTACGGCAAAGTACCGAACGAGAACATCCGCTTGGTGGCCCGCATCTTATGGCGCCTTGACAAAGAGGGGAGTGTGATGTCTGACACGCAGCTGATCACCCTGGAGGAGCTGGAAGACCACATTGATGACATGCAAGAGGATGAGTTGAAGGAATTAAAAGTGGACATCCACAACTTCCTGGACTTCTGGCCCCGTACCAGCAAGCAGCACACGATTGATAACATCTCACATATTTTTGGAGTGATTAACTGTAACGGTTTCACTGTGAGTGACCAGAGAGGCCTTCAGGCGGTGGGAGTTGGTCTTTTCGCTAATTTGTGTCTCGTGAATCATGACTGCTGGCCAAACTGCACCGTGATCCTCAACCACggcaaTCAATCGGCTGTGAATACTATGTTTCATTCTCAACGGAGgaTTGAGCTGCGTTCTTTAGGTAAGAttgaagagggagaggagctgACGGTGTCATACGTGGACTTCCTGAATTTGTCAGAGGAGAGACGAAGGCTCCTGAAAACACAATACTTCTTTGACTGCACATGTGAGCACTGCAAGAACAACATCAAAGATGACTTGAAGTTGGGGGGATTGGAAGTGGATGGTGTCAAGcCTACAGAGGAACAAGTGAAAGAGGCAACAGATTATTGCTTTCAAATGCTGGAGAAGATGGACAATGCTCGACTAAATGGCAACTACCATGAGgTGGTGAAAATCTGCAAGGATTGCATAGAGAAGACAGAGCCGGTTTTGGCTGACACTCACATCTACCAGCTGAGGATGTGGAGCACATTAAGTGAGGTGCAAGCTTACCTGCAGTTCTTTAATGAGGCTGCAGAATACGCCCGCAAAATGGTGCAGGGATACATGAAACTGTACCACCCAAACAATGCTGCTCTCGGTATGGCTGCCATGCGAGCAGGAGTGACTCACTGGCAAGCTGGGGAGATCGAGATTGGCCACGGGATGATCTGCAAGGCCTACGCCATTCTCATGGTCACCCACGGCCCAACACATCCCATCACCAAGGACCTGGAGGCGATGCGTATGCAAACAGAGATGGAACTGAGGATGTTCAAGCAGAACGAGTATGTTTACCACAGTATGAGAGAGGCAGCTCTGAAGAACAAACCAATGGCCATGATGCATGAGCCCAATTCTATGGAGGAGGGAATCAAGAATCTCTTCCACCGAAAGAAGTAAAAAGATCAAGAAAAACTACTTATTGTTAATCTTTTTCTGAGTTTTGGTGTGTGAGTCAACACATTTAGTcacatcattttcatttcactttTGTAGTTACACTTTTCATTAAAAATATGTCATGTCAGA
>XM_039803215.1
GTGCAGTTGTCATTGAAGAGAACAGAGGGCACAGATTAGTGTATGAGTTTCTCAAGTACTCCATCGCTGCATTTAGCTTCTCTCTTCCACTGAAACACTCATCGGTTCACCACTGAATCTCAGGAACCAGTGCAGGAATCATGGAGAATGTGGCAATATTTGACTCACCTGGAAAGGGGAGAGGTCTGAAGGCTACCAAGGAGTTTTGGGCTGGAGACGTCATTTTTTCTGAGCCCAgtatttcagctgttgtgtttGACAGTCTATCAGAGCGTATTTGCCACAGCTGTTTCCGCAGACAAGACAAGCTACAGAGGTGTGGACAGTGCAAATTTGGTCATTATTGTGACCGAACTTGCCAGCGCGCCGGCTGGGCAGAACACAAGCAAGAGTGTGGGGCCATCAAAGCTTACGGCAAAGTACCGAACGAGAACATCCGCTTGGTGGCCCGCATCTTATGGCGCCTTGACAAAGAGGGGAGTGTGATGTCTGACACGCAGCTGATCACCCTGGAGGAGCTGGAAGACCACATTGATGACATGCAAGAGGATGAGTTGAAGGAATTAAAAGTGGACATCCACAACTTCCTGGACTTCTGGCCCCGTACCAGCAAGCAGCACACGATTGATAACATCTCACATATTTTTGGAGTGATTAACTGTAACGGTTTCACTGTGAGTGACCAGAGAGGCCTTCAGGCGGTGGGAGTTGGTCTTTTCGCTAATTTGTGTCTCGTGAATCATGACTGCTGGCCAAACTGCACCGTGATCCTCAACCACggcaagaTTGAGCTGCGTTCTTTAGGTAAGAttgaagagggagaggagctgACGGTGTCATACGTGGACTTCCTGAATTTGTCAGAGGAGAGACGAAGGCTCCTGAAAACACAATACTTCTTTGACTGCACATGTGAGCACTGCAAGAACAACATCAAAGATGACTTGAAGTTGGGGGGATTGGAAGTGGATGGTGTCAAGcCTACAGAGGAACAAGTGAAAGAGGCAACAGATTATTGCTTTCAAATGCTGGAGAAGATGGACAATGCTCGACTAAATGGCAACTACCATGAGgTGGTGAAAATCTGCAAGGATTGCATAGAGAAGACAGAGCCGGTTTTGGCTGACACTCACATCTACCAGCTGAGGATGTGGAGCACATTAAGTGAGGTGCAAGCTTACCTGCAGTTCTTTAATGAGGCTGCAGAATACGCCCGCAAAATGGTGCAGGGATACATGAAACTGTACCACCCAAACAATGCTGCTCTCGGTATGGCTGCCATGCGAGCAGGAGTGACTCACTGGCAAGCTGGGGAGATCGAGATTGGCCACGGGATGATCTGCAAGGCCTACGCCATTCTCATGGTCACCCACGGCCCAACACATCCCATCACCAAGGACCTGGAGGCGATGCGTATGCAAACAGAGATGGAACTGAGGATGTTCAAGCAGAACGAGTATGTTTACCACAGTATGAGAGAGGCAGCTCTGAAGAACAAACCAATGGCCATGATGCATGAGCCCAATTCTATGGAGGAGGGAATCAAGAATCTCTTCCACCGAAAGAAGTAA

Function

symbol description
smyd1 Predicted to enable histone-lysine N-methyltransferase activity. Involved in positive regulation of myoblast differentiation and positive regulation of myotube differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

NR:

description
histone-lysine N-methyltransferase SMYD1-like isoform X2

GO: NA

KEGG:

id description
K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803214.1 True 1739 mRNA 0.47 10 24895062 24901099
XM_039803215.1 False 1571 mRNA 0.49 9 24895062 24900970

Neighbor

gene id symbol gene type direction distance location
znf367 znf367,LOC102779640 coding upstream 45707 24843706 ~ 24849355 (+)
gadd45ga gadd45g coding upstream 679973 24213241 ~ 24215089 (+)
creb3l3l LOC103366202,LOC104958765 coding upstream 684620 24203522 ~ 24210442 (+)
nim1ka nim1k coding upstream 692078 24181917 ~ 24202984 (+)
znf131 znf131,LOC102798529 coding upstream 713251 24174441 ~ 24181811 (+)
znf366 znf366 coding downstream 23430 24924529 ~ 24932594 (+)
mrps27 mrps27,LOC106943511 coding downstream 34561 24935660 ~ 24948527 (+)
ptger4a LOC103360740,LOC104967800 coding downstream 57063 24958162 ~ 24962478 (+)
loxhd1b LOC108233688,LOC105931393,LOC106513687,LOC106924721 coding downstream 73237 24974336 ~ 25000464 (+)
LOC120560335 LOC104920830,LOC101074081,LOC103362722,LOC101475228,LOC102784348,LOC101160076 coding downstream 117970 25019069 ~ 25023688 (+)
G64287 NA non-coding upstream 2545 24876562 ~ 24892517 (+)
G64279 NA non-coding upstream 32332 24860249 ~ 24862730 (+)
LOC120560123 NA non-coding upstream 376189 24514819 ~ 24518873 (+)
G64251 NA non-coding upstream 532153 24362475 ~ 24362909 (+)
G64235 NA non-coding upstream 660574 24234274 ~ 24234488 (+)
LOC120560056 NA non-coding downstream 133610 25034709 ~ 25040898 (+)
G64392 NA non-coding downstream 308825 25209924 ~ 25210170 (+)
G64450 NA non-coding downstream 358617 25259716 ~ 25302920 (+)
G64489 NA non-coding downstream 605065 25506164 ~ 25506568 (+)
LOC120560635 NA non-coding downstream 646924 25548023 ~ 25552264 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 57614 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 71996 24821314 ~ 24823066 (+)
G64108 NA other upstream 1201771 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 1332777 23487967 ~ 23562285 (+)
G63905 NA other upstream 1964857 22929899 ~ 22930205 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 783865 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 1013180 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 1024988 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 1458021 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 1511770 26412869 ~ 26414597 (+)

Expression


Co-expression Network