rilpl2 (rilpl2)


Basic Information

Item Value
gene id rilpl2
gene name rilpl2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19948803 ~ 19951293 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803910.1
AGTCCAGCGAGTCACGTTATTGGTGGATGAGTGATGGGGGAAGTGCTGTTGCTCTGGAAGTTTGTTACCTTCTGCCAGTAAAAAGTGTTGAACccgaaacaaaaagaaaagaaagcgcTATTATTTAGAGAACTGCGGCTAGTAGAGTAGAAAAGTTAACCttattgtgatttttatttttcaggagTCGTATCGTTCCGTCATGGAGTTTGGTGAAGAGTCGTCGCCCGCTCTGGCTTTCGAGAAGGACGCGTTTGAGCTCACGGTTGAGGATGTGTATGACATTTCGTATGTAATCGGACGAGATTTACTGAAAATAAGCAGCACAGGGGAAGAAGTGTCGGATTTACAGTTCAGAATAGTGCGTGTGTTGGAAATGTTTGAGACTTTGGTCAACAAGTACAACTTGTCTCTGGAGGAGCTTAAAATGGAGCGGGACAACCTGAAGAGTGAACTGGACAGGATCATCAAGGAGAGCTCCTCTGGGCAGGGCACGCAAACAGCGGGCCCAAACCAGCTGCTGGTGGACCTCACAGACCCCAATAGACCGCGCTTCACCATGCAGGAGCTGAAGGAGGTCCTGCAGGAGAGGAACCAGCTCAAAGCTCAGCTCATGGTGGCTCAGGAGGAGCTTCAGCTCTACAAGAGTGGGATTCTACCACAGGCTGAACCAGCCATGGTGGAGGTGGATCTGGAAACACCAGAAGCTACAGAGCACAGTCCAGCCACGACAAACCATGCAAAAGAAGAGAAGACAACCATAGGCAAACTGTTTTCATTCAGGCGAAAATAAGAAAAACCTTTCACAAGAACAGACCATGTAGAAGACAAACTGGATTTGTCAGCACATTTTTCTCATCATGTAACCACTTTTatattgaaattttttttttttttttaaacgatgtCTTGGGTCAATCTAACAAACTGTATTTTGTACATGAAATTTGAACCTAAGATGGTTGATAGTAATAGAGTTTCTGTAGTAGAAATATATAATACAAGGAAGGTTTGGTGAGGATATGAAATAAAACTGGAAAGTATTATCTAACTAGTGTTGGAGATTATGCTGAATGCAATCACTCAATAAAGTTATTTATaagctttaaaatgtaattttataaaatcaaaATTAAGTCTTTAAGGCACTTCTTGTTGGTCCAGTAATCCTAAACATATTTTCTTTCACTCTAAACTATCAGCtatcaaataaagaaaagagtTGTTCTGGCATACAATGGAAATGTAGTTGAAAGACAATATGCACTGTGTGAACAGTCACAACATCTGACATACA

Function

symbol description
rilpl2 Predicted to enable protein dimerization activity. Predicted to be involved in cilium assembly; epithelial cell morphogenesis; and protein transport from ciliary membrane to plasma membrane. Predicted to act upstream of or within protein transport. Predicted to be located in centrosome and cilium. Predicted to be active in ciliary basal body and cytoplasm. Orthologous to human RILPL2 (Rab interacting lysosomal protein like 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803910.1 True 1297 mRNA 0.41 4 19948803 19951293

Neighbor

gene id symbol gene type direction distance location
LOC120560172 pitpnm2,LOC101483632,LOC102198833,LOC102787753,LOC102300359 coding downstream 11329 19891771 ~ 19937474 (-)
mob1a LOC101160416,LOC103363194,LOC107739988,LOC101481896,LOC107087288,LOC107675956,LOC107702973,LOC102234237 coding downstream 66287 19873101 ~ 19882516 (-)
trafd1 trafd1 coding downstream 76774 19859583 ~ 19872029 (-)
smtnb smtn coding downstream 91638 19806721 ~ 19857165 (-)
inpp5jb LOC103363185 coding downstream 151244 19781122 ~ 19797559 (-)
LOC120560981 LOC104962302 coding upstream 525 19951818 ~ 19958036 (-)
hip1rb hip1r coding upstream 7641 19958934 ~ 19980453 (-)
kntc1 kntc1 coding upstream 93308 20044601 ~ 20066733 (-)
si:ch211-110p13.9 LOC104946526 coding upstream 123300 20074593 ~ 20076892 (-)
LOC120560702 mlxip coding upstream 183010 20134303 ~ 20152099 (-)
G63039 LOC100705440 non-coding downstream 408683 19536578 ~ 19540120 (-)
G63060 NA non-coding downstream 418177 19530421 ~ 19530626 (-)
LOC120560999 NA non-coding downstream 431351 19514668 ~ 19517452 (-)
G63050 NA non-coding downstream 439539 19505488 ~ 19509264 (-)
G63034 NA non-coding downstream 494748 19453851 ~ 19454055 (-)
LOC120560986 NA non-coding upstream 42280 19993573 ~ 20001773 (-)
LOC120560985 NA non-coding upstream 59604 20010897 ~ 20012908 (-)
G63282 NA non-coding upstream 70011 20021304 ~ 20021674 (-)
G63283 NA non-coding upstream 73606 20024899 ~ 20025407 (-)
G63284 NA non-coding upstream 74619 20025912 ~ 20026668 (-)
LOC120561342 NA other downstream 217230 19711448 ~ 19731573 (-)
LOC120560442 LOC104920315,LOC103374896,LOC100704901 other downstream 393895 19549451 ~ 19554908 (-)
si:ch211-225b11.1 LOC103353539,LOC101465611,LOC100705171 other downstream 711717 19179505 ~ 19237086 (-)
ficd ficd other downstream 846329 19100244 ~ 19102474 (-)
mmab mmab other downstream 1211397 18734908 ~ 18737406 (-)
LOC120561469 NA other upstream 158123 20109416 ~ 20124872 (-)
G63345 NA other upstream 317827 20269120 ~ 20282211 (-)
LOC120560417 LOC104920278,LOC103361005,LOC106523804,LOC103398708,LOC101066291,LOC101475922 other upstream 500301 20451594 ~ 20477805 (-)
G63487 NA other upstream 740585 20691878 ~ 20692279 (-)
ntrk2a ntrk2 other upstream 1528493 21479786 ~ 21584276 (-)

Expression


Co-expression Network