XLOC_005253 (pcgf5b)


Basic Information

Item Value
gene id XLOC_005253
gene name pcgf5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16405598 ~ 16435150 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010102
CACCACTCTCATGTTTTTAATGCAAACTGACATGATCGGACAAGTCCTATAACAGCCTATTAGCAGGTACCTGCAATAAGGCCATATTAACAAATCCTCCTGTTTGACAGGCCTTCCAAGTTTGAGTTTTCATTAATAAACTGGTTCTAAACTGTTACTGGACTACTTTGTAATTGAAGGCTGCGCCCTAGTTTGTGTCCAATCAGAGACAATCTGCCATGGAATGAATAAAACAGCAATGCGTAAACAAGAACTGGAAAGTCCTCCGCCCCCTTCCCCATATCATCTCAAATGAAAGCAGTTCCGTATTCTGTGCCGCTACATCCCTTTTAACAGCCCAAATTCGCTCAAGcctgtttgtaaaaaaaatcaatgcgCGACATCAACACGGACCCATGATGTGTGGAAGGTCTCTCTTAAAGACGTTTAATTACCCATGATGTCATGAAGGACGAGAGGCCAGGGGCCCTTCAGCAAAACGCTGCAGTTGAGCCATAGAGTGTCTGAATCTGCATTCCACTTCATCCTTAAACCATCTGTTCTCCCTTCATCCCCACTTCGGGAACTTGACAATGACATCACATAGGAAACACCTGGTGAGGGACTTCAACCATTTCATCACCTGTTTTGTCTGTAAAGGGTACCTGATCAAGCCCACCACCGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGTATTGTCCAGCATTTCGAGGACAGCAACGATTGCCCAAAATGTGGTATCCAGGTTCATGAAACAAATCCCTTGGAGATGTTAAGGTTGGACAACACTTTAGAGGAAGTGATATTTAAGCTCGTGCCTGGTCTCAGAGAAaAGGAACAGCAGCAAGAGGATGAATTCTGGAGAAGAAAGGAATCAAACGATGagaATGGCCCTATGTGTAAGAAACGGCGTGTTGATGAAGAGGATGATGATAAAGGTGATGGAGACTATCACAGAAGTGATCCACAAATAGCCATCTGTCTAGACTGCTTGCGTATCAATGGGCAGATGGGAGAGAACATTGTTAAGGGCTTAATGAAAAAATTTATTCGCTGCTCAACAAGAGTGACTGTTGGAACAATCAAGAAGTTTCTGAGTCTGAAGTTAAAGCTTCCCAGTTCTTATGAGCTAGATGTTCTATGCAACGGTGAAATAATGGGCAAAGACCACACCATGGAGTTCATCTACATGACCCGCTGGAGGCTTCGGGGAGAAAATGTCTACCCAATGGTACTTGAATATCGACCACGCATTGACTTTGGCTAGGTTGAAATATCCTGCACAAGTTTCAGCCTATCAACAGACAGCAAATTGAATGGCAAGTCCTGTTCTGAAGATGTACTCTATCTGTCTTTTCTCTTCAATTTCATTAGCTCTCTTTATTGAGGTGATCTTTAATGTGACCAACAACATGACCATGTCACAAGAATTTGTGATTTTTATCTCTTGTCTTGTGCTTCATTTACCAAAGTGACACATAGTCATATTAAGGACCTTTAGCAATTATGGTGGTAGCTTCCTTGAGTTTTCCATCATGTGAGAAATCTCACATGATGGAAAACGTTATAGTGCCTTTTTCCATAAATCATCTTATGAAGAGCTgagcttaaaaatatattttatacttttaggTCCCTTTAAGTCTGAGGTGATTGGGAATCTCAAATTCTTAGTTTTTAGTTTGATGATTTTCATCATGCCCATTTAAAGGAACActgcacttttttttaataagcttATTTTACATTACAACTCCCGTAAAGTTACatttgagttttactattttttaaattgtccTAAATAATTCTCctagcttgactcttctgtagttatatCATAaactaaatccaatagaaaatgaaAAGCTACAATTGTCTGGCCGATATGAGCCGAACTATTCTGACAtgataatcaaggaactttgctgccattCCATGATGAAAATGGTAAAGCTGCTCTGTAAAAATATCCTGGTTACCTTAAATTttgaagctgaatcaaattaaccgtaTAATTCCATTAAACTTATATTGTGTAAACTGTcttaaacagcttgtgtaactaatacaattaagttagaacatgaattaattagtttaataagttacaataaattaaaaacatatgcgGACATGACTAATTGCTTATATACATTTTACAGAGTGGCAAACTCTTTAACTCTAGTGaagttaaaaatctatttttaaaaaataaataaataaataatgtggagtgttcctttaagtttaaattgctgtaaaacttacagtattactggcaattttgcttgccagtaatactgtaaaatttacaagtgctCTGTAAATTAACAACTACAACTGGACTGTAAAACCACAGCCCAGTCATAACTGTTAAATCACAGTGTGCTTGTAATTTTTGCCAGTAATTCTGTAAAAATtgccaataatactgtaaaatttcacagtaaaaaatacactgtaaattaataattacaattgtgtTGTAAAATTAATCAAAGCACAATTTTAagtgttaatttacagtgcgcttgtaaattttacagcattactggcaaccaaaattgtcagttatactgtaaattttacagcagttttttttttactgtgtttttattgGAAGACATACTTCCATGATCACACAAATACGTTTTGGTTATTTGGTGACATCTCTGCAGATGTGCCTCATTAATTAATTCGTTAATTGTAAATAAAGCAGACGTTAACTTGGCTAAATACAGCAAGTAGATGTTTACTAATGCCATCATACTTCCCTGCCATCCTAATAggttatatgcacagctagtgtttttttcccataccgataaacttccggtgaatggTTATTGTGACTTTTCAATTTTATATGGTTTCTTTTACAGAatcaatattgtaatgtaattaaaatacaatagacttaagcattcatttagttgttcaagcgtaaaatgaaatgaaaatcctTTTGCAAGCACGCACTGTCAGGATCAGCAAGCTCGCGCAGAAGCACCATTTAAAATACTGGAAGACATGGCACAGGAAACCTTAATTTAATGCAGTACTTCTtttacaatctgagacccactctatatcatatatcaatcaggcagttgAGATTGTGgatttttaagaaaacagaccctgattttgtaactgcatacagttcaccggaagcgcttgacCCAGGTTTCTGCAAAATTAAAAggccttctgcatataccctattgagaAGAAGTCAAGATTTACCataattgtgtcttttttgtttATGCTGGGCAGGtagtgagttaaaaaaaaaaaaaaaaaaaaaaaaactactcacaATTTGTAAATCCCTGGCTTGCCTGTTTCATGTCAGAATAATTCTCAAAACAAGTACTCCAAAGAAAGGAATGCCAACACAAAGGAAGTACTAATCGTTTACTCTAATAAAAAGAATTAAGGGATTTGCTAGACCTCATACACAGgaattattacagtatattaGTCTGTTCATATTACACCAAAGACCACATGGGATTCTGTGGCTAAAAACTGTTTGCTTTGACTTACAACAAACTATACTCACAGAAAGAGGCCATGTGGAAAAGATGAAGCTAGAATTTCGGTGCGTGAAGCAAAGCTACCTAATCTGTCAAACAGAATTCAAAGAAGCTTTTTATTTTCGCGTCAGTGACACAtttatgatttttgtttttaaatgtccatGAAAAATGACTTCTGACAGAATTAAGACAAAAACCATAAAGGAAATCAAGGTATATTAATCAATATTATCTTGCAATTGCTTTCACATTCAAAATCGTGATTTTACGTTTAAATTATTAAGTTGAAGTTGAATAATGTGTTTAGAATAGACCTCTGAATGTTGTTGTGCTGCAATGATCAGGATGTATTTTTGTAAGAAGCCCTTGTAGATATTTTATCTTTTGAAAAATCGAAATGTATCTTTTATGTTAAACGAACATCAAATGCTGCTTAGAATATTCTATTTTTCAATGTAAAGCCCCTGATTCCCATAGAGACTAGAAATGTAAATAACATTATTGTATTGTGTGTCTTCATTCAGAAGAAAAGTGGAAAATACACTCATGACTATTGATAA
>TCONS_00010103
AACTTCAGGTGTAAGGTTTCtgtgaatattttaaattttataaggttccttttacaacaTCGACATCTTAATGTAATCAAACTACAATTAGTAAATAATCAGTAAATAAAcgtaagcattcatttagttgttcaagctaGATAATAGACTATGTAACCACTAGCGtcgtcaggatcagcagGGCTTAATGAAAAAATTTATTCGCTGCTCAACAAGAGTGACTGTTGGAACAATCAAGAAGTTTCTGAGTCTGAAGTTAAAGCTTCCCAGTTCTTATGAGCTAGATGTTCTATGCAACGGTGAAATAATGGGCAAAGACCACACCATGGAGTTCATCTACATGACCCGCTGGAGGCTTCGGGGAGAAAATGTCTACCCAATGGTACTTGAATATCGACCACGCATTGACTTTGGCTAGGTTGAAATATCCTGCACAAGTTTCAGCCTATCAACAGACAGCAAATTGAATGGCAAGTCCTGTTCTGAAGATGTACTCTATCTGTCTTTTCTCTTCAATTTCATTAGCTCTCTTTATTGAGGTGATCT
>TCONS_00010104
GTGCCGCTACATCCCTTTTAACAGCCCAAATTCGCTCAAGcctgtttgtaaaaaaaatcaatgcgCGACATCAACACGGACCCATGATGTGTGGAAGGTCTCTCTTAAAGACGTTTAATTACCCATGATGTCATGAAGGACGAGAGGCCAGGGGCCCTTCAGCAAAACGCTGCAGTTGAGCCATAGAGTGTCTGAATCTGCATTCCACTTCATCCTTAAACCATCTGTTCTCCCTTCATCCCCACTTCGGGAACTTGACAATGACATCACATAGGAAACACCTGGTGAGGGACTTCAACCATTTCATCACCTGTTTTGTCTGTAAAGGGTACCTGATCAAGCCCACCACCGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGTATTGTCCAGCATTTCGAGGACAGCAACGATTGCCCAAAATGTGGTATCCAGGTTCATGAAACAAATCCCTTGGAGATGTTAAGagaATGGCCCTATGTGTAAGAAACGGCGTGTTGATGAAGAGGATGATGATAAAGGTGATGGAGACTATCACAGAAGTGATCCACAAATAGCCATCTGTCTAGACTGCTTGCGTATCAATGGGCAGATGGGAGAGAACATTGTTAAGGGCTTAATGAAAAAATTTATTCGCTGCTCAACAAGAGTGACTGTTGGAACAATCAAGAAGTTTCTGAGTCTGAAGTTAAAGCTTCCCAGTTCTTATGAG
>TCONS_00010105
CCGCTACATCCCTTTTAACAGCCCAAATTCGCTCAAGcctgtttgtaaaaaaaatcaatgcgCGACATCAACACGGACCCATGATGTGTGGAAGggtgcttattttgaactgtgggaggaaacccgaggacccggggaaaacccactcgaccacggggagaacaagcaaaactccacaaagaaacgccgcctggtttggaaaggaattaaaccaggggcattcttgctgtgagacaacagcgcCAATTACTGGCCAACGTGACACCTGTTTGAAAGTAGGGAAAGTAGAATTGGgtggggggggtttcttcaagaggaagatattgagatgagaaaatcATGAGGTAGAGatcatctgataggataatcagtctttagctaaagttggaaccgCTGTGAACAATCAAAAGTCTCTCTTAAAGACGTTTAATTACCCATGATGTCATGAAGGAC

Function

symbol description
pcgf5b Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0031519 PcG protein complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-34 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

Ensembl:

ensembl_id ENSDARG00000052388

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010102 False 4109 mRNA 0.36 9 16405598 16435150
TCONS_00010103 False 546 processed_transcript 0.38 4 16408308 16416757
TCONS_00010104 False 714 nonsense_mediated_decay 0.45 5 16415810 16434838
TCONS_00010105 True 453 processed_transcript 0.46 3 16431816 16434835

Neighbor

gene id symbol gene type direction distance location
XLOC_005252 hectd2 coding downstream 24637 16332416 ~ 16380961 (-)
XLOC_005251 kcnj19b coding downstream 320763 16062560 ~ 16084835 (-)
XLOC_005250 NA coding downstream 545729 15857732 ~ 15859869 (-)
XLOC_005249 acbd4 coding downstream 785508 15568761 ~ 15620090 (-)
XLOC_005248 hexim1 coding downstream 838494 15565344 ~ 15567104 (-)
XLOC_005254 rpp30 coding upstream 11078 16446228 ~ 16452200 (-)
XLOC_005255 CABZ01044816.1 coding upstream 58202 16493352 ~ 16493468 (-)
XLOC_005256 HTR7 coding upstream 87322 16522472 ~ 16524727 (-)
XLOC_005257 si:dkey-269i1.4 coding upstream 120453 16555603 ~ 16558106 (-)
XLOC_005258 FO704724.2 coding upstream 137045 16572195 ~ 16572309 (-)
XLOC_005247 NA non-coding downstream 955340 15445574 ~ 15450258 (-)
XLOC_005246 NA non-coding downstream 1161598 15242567 ~ 15244000 (-)
XLOC_005244 NA non-coding downstream 1279549 15125409 ~ 15126049 (-)
XLOC_005243 NA non-coding downstream 1285485 15117887 ~ 15120113 (-)
XLOC_005260 BX465840.1 non-coding upstream 163593 16598743 ~ 16598857 (-)
XLOC_005263 BX465840.2 non-coding upstream 219531 16654681 ~ 16654795 (-)
XLOC_005265 BX322603.1 non-coding upstream 307902 16743052 ~ 16746547 (-)

Expression


Co-expression Network