XLOC_005246


Basic Information

Item Value
gene id XLOC_005246
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15242567 ~ 15244000 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011109
GATGCCTCAGCCACATCATGAAGAAAGTGAAAGCATTCTGCAAGAAACAaggtttcCAAAGCAGAATGAAGCACAAACTATTGCCACAggggattgaaccaccaacttctccaccatgttttacacagtggatgcccttccagccgcaacccatctctgggaaacatccatacacactcattcacactcatagactacagacggtttagcctacccaattcaccagtaacgcatgtctttggactgtggaggaaaccggaggaaagccacacgaacgcagggagtacatggaaactccacacagaaacggcaactgacccagctgaggctcaaaccagtaaccttcttgctgtgaggcaacaacactaccttctgtgccactgcattgccactacagtcatttttgtttattcaactcacctatagcacgtgtttggtaactaactgactgaccctCGAACCAGCgatatttttgctgtgaggcaacagtgtttatcactgagccactgtgcttcGGTAGCCAATTAGACTGTCCATGGACCTCTTTGTACTCCTGACTAGTGCTACTACAATGATGGAGATAAAGGACATCATTGTTAGCATGGCAGTTGTGTTTTCCAGCTCCCATAGTGATGACAGTGTTCAAAAGCATTTCCAAAATCTTCAGAACATGACGGAGAGAATGGGCATGTATGAAGGAAGTTACTTTGGTGAAAATTACTCTCAGatataAATGGGACCCAATCCATTTGAGAATCATTTTCAAGACAGAATAGCAAATGCACCTGTATGCGAAAAGGGGGAGGCAAATGAGTATCGTTCACCAACATTCATGCCCAGCctgttaaaatacttttttctcTCAGGCACCACTCTGGTCGGGTCTCATGTTGGGTAAATGGACTGTGTTTGTATGCCTTTGGTTATTGTGGTATGAGGtcaaaaatagtatatatatatttaaaactgttAAGTGATAGAACGAAATTCACATCTTTTTTTCCACATCCTCCACTTACTTTCATTTTCCATTTTTCCTCTGACAAAATAACTATGTCTTTAATGCGCAAGTCCATCATTTGTATGAACTTGTTTTCAAATTAATTACATACccctttttttaatgaatgct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011109 True 1132 lncRNA 0.42 3 15242567 15244000

Neighbor

gene id symbol gene type direction distance location
XLOC_005245 sult1st6 coding downstream 37480 15197857 ~ 15205087 (-)
XLOC_005244 NA coding downstream 116518 15125409 ~ 15126049 (-)
XLOC_005243 NA coding downstream 122454 15117887 ~ 15120113 (-)
XLOC_005242 pkmyt1 coding downstream 239948 14965587 ~ 15002619 (-)
XLOC_005241 neurod2 coding downstream 319612 14920088 ~ 14922955 (-)
XLOC_005247 NA coding upstream 201574 15445574 ~ 15450258 (-)
XLOC_005248 hexim1 coding upstream 321344 15565344 ~ 15567104 (-)
XLOC_005249 acbd4 coding upstream 324761 15568761 ~ 15620090 (-)
XLOC_005250 NA coding upstream 613732 15857732 ~ 15859869 (-)
XLOC_005251 kcnj19b coding upstream 818560 16062560 ~ 16084835 (-)
XLOC_005240 NA non-coding downstream 402008 14839787 ~ 14840559 (-)
XLOC_005237 NA non-coding downstream 1098408 14138286 ~ 14144159 (-)
XLOC_005224 NA non-coding downstream 2136344 13102866 ~ 13106223 (-)
XLOC_005255 CABZ01044816.1 non-coding upstream 1249352 16493352 ~ 16493468 (-)
XLOC_005258 FO704724.2 non-coding upstream 1328195 16572195 ~ 16572309 (-)
XLOC_005260 BX465840.1 non-coding upstream 1354743 16598743 ~ 16598857 (-)

Expression


Co-expression Network