XLOC_005245 (sult1st6)


Basic Information

Item Value
gene id XLOC_005245
gene name sult1st6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15197857 ~ 15205087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010093
ATTACAGTAACGCCCATAGAGTAGGGACACAGACAGAAAAAGCAAACGGTAGAGGCTGAGAAAGACCACTGAAAATCTTTGGATCATTTATTATTAGAATACTAAAAGTATAGGAGCAAGAATATCTGGAAAGAAaacagaataaattaataattcaagCGAACAAAGTCGAACTAAATATCAAAAGCTAAGGCAGTGAACTAAAACAGCTAAAGCATAAAGGAAAAAGACAGATTTTTGAGGCAAAAAGTAAGATTTCAGCAATAGCAAAGAGGCAAAGACAAGAACGTGGGGAAACAAAGGAACAGAAGATATTTCAGAGGACGTACGTGTTGTAATGGAACAGGAACCACTGAGCTATGAAGAAGCCATTACAAGGGCAGCAGATGCTATTCAGCGATTTCCTCTAAAAGATGTTCAGGGTGTTCCTCTCATGAGCACAATTGCTGACAACTGGAAATCCATTTCAGAATTCTGCCCTGACCCATCAGACCTACTGATCTCTACTTACCCTAAAGCAGGCACTACCTGGACTCAAGAGATAGTGGATCTTCTGCTAAACAATGGAGATGCTCAGGTGTGCAAGAGAGCACCAACAGCTGTCCGTATTCCCTTTCTGGAAATTTGTGCTCCTCCGCCCATACCTTCAgGGCTTGAATTGCTTAAACAGATGAAACCACCTAGAGTCATTAAAACTCACCTGCCCATTCAACTAGTGCCTGTAGGATTCTGGCAAAATAAATGCAAGGTCATTTATATGGCACGGAATGCGAAGGACAACCTTGTAAGTTACTTCCACTTTGATCGTATGAATCTTACCCAGCCTGAGCCAGGACCTTGGGATGGATACATCCACAAGTTCATGAAAGGACAACTAGGTTGGGGCTCTTGGTATGACCACGTAAAAGGTTACTGGAAGGAATCCAAGGAAAGGAATATTCTCTACATACTCTATGAGGATATGAAAGAGAACCCTTCTAGAGAAATTAAGAGGATCATGCACTATTTGGACCTGTCTGTTTCTGAGGATGTCATAAATAAGATTGTGCAGCTGACATCTTTCCATGTCATGAAGGACAATCCAATGGCTAACTACTCATACATCCCCAAAGCTGTGTTTGATCAGTCCATTTCTGCCTTCATGAGaaaagGAGAGGTTGGTGACTGGGTAAACCATTTCACCCCAGCTCAGTCCAAGATGTTTGATGAAGACTATACAAACCAGATGAAAGATGTGGACATACCCTTCCGCTTAAACATTTAATCTCTAAATAATGTATgcagtattaaaatatatttaatatcacaaaaacactgctttatttgacTGATTATATATACTATGCATGAATTCATACACAACAGATGACTCAATTTTCTGTATTTCTGTAAAGGTTAGCCTTATATCAGATGTCAAACAATTTGCTTtcagatattttaatattattaattatagtttgaTTATTTGTAGTTtaggatttttatatatatttttgaattgtTGTCATTTTTGGTCACATATTTGgctaatgtaatataatttacaaTTTGTAACATGTTTAGCatgatttaaaacaatattaaaatgttttggcaGATA

Function

symbol description
sult1st6 Enables estrone sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. Orthologous to several human genes including SULT1C2 (sulfotransferase family 1C member 2); SULT1C3 (sulfotransferase family 1C member 3); and SULT1C4 (sulfotransferase family 1C member 4).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-343 Enables estrone sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. Orthologous to several human genes including SULT1C2 (sulfotransferase family 1C member 2); SULT1C3 (sulfotransferase family 1C member 3); and SULT1C4 (sulfotransferase family 1C member 4).

Ensembl:

ensembl_id ENSDARG00000006811

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010093 True 1600 mRNA 0.37 7 15197857 15205087

Neighbor

gene id symbol gene type direction distance location
XLOC_005244 NA coding downstream 71808 15125409 ~ 15126049 (-)
XLOC_005243 NA coding downstream 77744 15117887 ~ 15120113 (-)
XLOC_005242 pkmyt1 coding downstream 195238 14965587 ~ 15002619 (-)
XLOC_005241 neurod2 coding downstream 274902 14920088 ~ 14922955 (-)
XLOC_005240 NA coding downstream 357298 14839787 ~ 14840559 (-)
XLOC_005246 NA coding upstream 37480 15242567 ~ 15244000 (-)
XLOC_005247 NA coding upstream 240487 15445574 ~ 15450258 (-)
XLOC_005248 hexim1 coding upstream 360257 15565344 ~ 15567104 (-)
XLOC_005249 acbd4 coding upstream 363674 15568761 ~ 15620090 (-)
XLOC_005250 NA coding upstream 652645 15857732 ~ 15859869 (-)
XLOC_005237 NA non-coding downstream 1053698 14138286 ~ 14144159 (-)
XLOC_005224 NA non-coding downstream 2091634 13102866 ~ 13106223 (-)
XLOC_005255 CABZ01044816.1 non-coding upstream 1288265 16493352 ~ 16493468 (-)
XLOC_005258 FO704724.2 non-coding upstream 1367108 16572195 ~ 16572309 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_00844727_00861103 SULT1ST6 coding CI01000161 null 844727 ~ 861103 (+)