XLOC_005241 (neurod2)


Basic Information

Item Value
gene id XLOC_005241
gene name neurod2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 14920088 ~ 14922955 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010090
CTGCTTGCTAGGGATGCCACACCGTCTCGCTGCAGTCCGGGAAAAGGATAACACGTATCGGATCAAAGACAATCGTCGTTCTCTTTTTCTAAGTCTTCGTAGCGTAGTAGGGAACTGTAGCGTGAAGATGATGTAGACGCACGCACCCTCACCCGTAGAGCACCATAAACTAGTGGAATCGTAATGTTAACAAGATTATTCAAAGAACCTTCACTGCTTCCGGACATGCAGAAGTTCGGGGGCTGGGTGGATGACAGCGGGAGCGAGGACTCCAAAACCAAGGACGAAGAGCAGGAGCGCTGTCGCCTTGGCGACGAGGACTTAGACGAGGGCAGTGTGAAAGGAGGGGGCAGCCGGGCTCAGTCTGAAATTGCAGGGGAGGAAGACTATGACGAGGATGTTGATGAAGATGACTGTGGAGAAGAAGGTGATGGAGACAGACCCAAAAAACGTGGGCCCAAAAAACGCAAAATGACTCCGGCTAGGTTAGAGCGCTCGAAAGTACGGCGCCAAAAAGCAAATGCCAGGGAGCGCACGCGCAtgcacgatcttaattcagcccTAGACAATCTACGCAAGGTCGTACCGTGCTATTCAAAAACTCAGAAACTTTCCAAAATTGAAACGCTAAGATTggcaaaaaattacatttgggCCCTGTCCGAAATCTTAAGGAACGGGAAAAGACCGGACGTAGTCTCTTATGTTCAGACATTGTGCAAAGGACTATCCCAGCCCACGACCAATCTGGTGGCTGGGTGTCTCCAACTTAACTCAAGGAATTTCCTAACGGAACAGTGTCAGGAGGGAGTGCGCTTTCACACACCCACCCCTTCATTCTCCATTCAATCATATCCATATCAGTGCTCCCGTCTTTCAAGCACAAATTGTCAGTCCGGATCGAGCACTCATAGCCTCCGAAATCACTCCCTCTGTTCGGCCTATGAGGCTCTGTACACCGAAGGGACGTCCCCAGAATACATCAGTGCAGATTTCGAGGGCCACCACAGCCCTCCGGTATGTGTAAATGGTAACTTTGGTGTGAGACAAGAGGAGCCACTTTCACCAGACGCGGAAAGAGGCTATCAATATTCTATGCATTACACCAATCTGCATGGCTCACGTTCATCTGCTGCTCATGGTATTACTTGCGGACCACCAGGAGCTCGCAGCGGCAGTGTACACTCAGAAAACCTTCCCCTGTTTCATGATGTACACATGCACCACGATCGTACGCCTGCATATGAAGAACTCAACGCCTTTTTCCACAGTTAGGTGATTCTTCCCTGCTCTGACTTTTTGATCCACGTTGAAAAAGTGtcatttactttactttatttggAAATCAGTCGGTGCAgggtaatatatattttttattcaaattaattcaattaatcaAATAAGTTGTTTGTTAGTTTTGCATTACTGCATAAGAATCCGATTTTTACAATAATTACTTAATGACAAAATGTGTATACAGAATTCAGGACATGAGCCCAAAGCGAGTTTATAATGTAAAAACACAAGAaagaaaaatgttgcaaaaaatgttaaatcaagTATGTTTCTTGCTTCAATAAATAAGGAAGCATATTGTTCCAGAA

Function

symbol description
neurod2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including regulation of neuron differentiation; regulation of synapse maturation; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in granule cell. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 72. Orthologous to human NEUROD2 (neuronal differentiation 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0090128 regulation of synapse maturation biological_process
GO:0007399 nervous system development biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-010608-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including regulation of neuron differentiation; regulation of synapse maturation; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in granule cell. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 72. Orthologous to human NEUROD2 (neuronal differentiation 2).

Ensembl:

ensembl_id ENSDARG00000016854

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010090 True 1604 mRNA 0.46 2 14920088 14922955

Neighbor

gene id symbol gene type direction distance location
XLOC_005240 NA coding downstream 79529 14839787 ~ 14840559 (-)
XLOC_005239 FO704673.1 coding downstream 369011 14545475 ~ 14551077 (-)
XLOC_005238 avl9 coding downstream 708795 14166036 ~ 14211293 (-)
XLOC_005237 NA coding downstream 775929 14138286 ~ 14144159 (-)
XLOC_005236 aclyb coding downstream 842018 13973058 ~ 14078070 (-)
XLOC_005242 pkmyt1 coding upstream 42632 14965587 ~ 15002619 (-)
XLOC_005243 NA coding upstream 194932 15117887 ~ 15120113 (-)
XLOC_005244 NA coding upstream 202454 15125409 ~ 15126049 (-)
XLOC_005245 sult1st6 coding upstream 274902 15197857 ~ 15205087 (-)
XLOC_005246 NA coding upstream 319612 15242567 ~ 15244000 (-)
XLOC_005224 NA non-coding downstream 1813865 13102866 ~ 13106223 (-)
XLOC_005222 BX572641.1 non-coding downstream 2584757 12335216 ~ 12335331 (-)
XLOC_005214 NA non-coding downstream 4147142 10769131 ~ 10772946 (-)
XLOC_005247 NA non-coding upstream 522619 15445574 ~ 15450258 (-)
XLOC_005250 NA non-coding upstream 934777 15857732 ~ 15859869 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000403_00063815_00064618 NEUROD2 coding CI01000403 null 63479 ~ 65004 (+)