XLOC_005224


Basic Information

Item Value
gene id XLOC_005224
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13102866 ~ 13106223 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011105
GTCAGATacttttacaaatttttatttatttttgttatttgcatGTGCTCTGCAAcagtgaaaatatatttatatgacaTTGGGTCgcacaattacagaaataaaacaaaatcaaaccacAATGATAACTTTACATAAGCTTACATTTCAAATGAACATTAAAGGACCAAAATTAACACTCAAATTCTTTCTATGAAAGACACAGCTAAATTTATAAcgaaacatgtttttttatacaTCTCAAATTAAACCCAACACCTTTAAGTGCAACTGTAGAATTACATCAACCCCAACAGCTCGCTCTGAAGACCTGCAGGCCACAAATCCAACATGATCAGCTTTTTCTGATGCGACGCGCTTCATGAGGCATAATACGGTCATGATTAATGACTGAATATCAGCCAACTTTATATACCAACCCATTGATAAATCATGTCAAACAGCGCTAATCTGACCTTGACAGAAGAACGGATCGAAAAATGGATGttgaaaaatatagaaaataaatgttGATAGAAAAATAGAAATGTAGATAAATGTTGGATATTCAGTCCCAAAATCCAATTCAATTCATGCTCGGCGTCGTCCTGTGCTTCAGGGTCAATGCAGAAACAGGTCATCGGGTCTGTGCTCATTCATGAAGCTACAGCCAAATATCCTGTAGCTGATCTGCAgtttgaatTCCATGTTGTTTTTTAGTTGGTGCACAGTCCGCTTGTCCAGATATCGACAGAAGAGTGTTAGCAGGTTGGAAGGCAAAAGCAGTGGCTCAACGAGTGATGTCTGGGACAGCTGCCTGGCCACATGGAAAACCGTGTCCGTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011105 True 824 lncRNA 0.38 2 13102866 13106223

Neighbor

gene id symbol gene type direction distance location
XLOC_005223 ccser2b coding downstream 21637 12954938 ~ 13081229 (-)
XLOC_005222 BX572641.1 coding downstream 767535 12335216 ~ 12335331 (-)
XLOC_005221 atoh1c coding downstream 1333977 11768114 ~ 11768889 (-)
XLOC_005220 btbd16 coding downstream 1453176 11601559 ~ 11649690 (-)
XLOC_005219 plekha1b coding downstream 1509430 11496740 ~ 11593436 (-)
XLOC_005225 cxl34c coding upstream 46961 13153184 ~ 13155653 (-)
XLOC_005226 pelo coding upstream 82393 13188616 ~ 13205854 (-)
XLOC_005227 emc9 coding upstream 205716 13311939 ~ 13318969 (-)
XLOC_005228 lsm5 coding upstream 225303 13331526 ~ 13337037 (-)
XLOC_005229 ghdc coding upstream 421199 13527422 ~ 13549538 (-)
XLOC_005214 NA non-coding downstream 2329920 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 2972964 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 3039198 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 3431729 9669927 ~ 9671137 (-)
XLOC_005237 NA non-coding upstream 1032063 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 1733564 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 2011664 15117887 ~ 15120113 (-)
XLOC_005244 NA non-coding upstream 2019186 15125409 ~ 15126049 (-)
XLOC_005246 NA non-coding upstream 2136344 15242567 ~ 15244000 (-)

Expression


Co-expression Network