XLOC_005220 (btbd16)


Basic Information

Item Value
gene id XLOC_005220
gene name btbd16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 11601559 ~ 11649690 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010058
CAGCAACAAGACCTATAAACAATCAGACAAGGAACATAAACACTCCGGCTAAGTTTTCTTCATTCTTCATGCACCTGTTCGGGCACCTCTTGATTTATTTAATGGTATTTAGTGTTTGTTCAAGATGTAGAAAGGAATAACACAATTCTCtttacatttagtctttaaatttctttattgttttggAATATAATGTGAAGTTCCAGTTTACATCTGCGCCATTTAAAAGACAATGCACATCCAGTGGAGTCCTTCAACCGGCAAAAATATGACATTCAGACCAAACACAAGGTCAGTGATGATAACAACCCAACCAAACACCACACGAAATGTGTCAGCTCGCTCACTATGTCAGCGCACACAAGCTGGGCACACCAACCGCTGGCAGCTGGCAGGTGCTTTAGGCAGTGACCTGTTGGGGCAAGCACAGATTCAGAGGGCAGAGGAGTTTGCCAATAAATCACCAGAAAGGAAAATTAAATCAGCTGACCCCATGGCACTCCACTGGCACGAGGATGCCACTAGCTGCCCGCAGTCCCCTTTGCCACGTCTTGTTCACCCGCTCTCGGCCAGCCGACGCACCAGACTCTGCAAAGATGTCACATGGTCTTCAAAGCTTCACACTCCAGAGGAACGGTTTCACGTCTTGTCTCGCAAAGTGACCAATAATTCTAATCCAGATGCAGTACTGGAATGTCTTGGGGTCAGGTGGGAGCTGCACTGCGCTGTCTTGAGTAGTTCAGACACATTATGTGAATTGTATACGAGCAGCAAGAGACAGAGGGATGTTCAGCTACATGAGAGAGCAGTTAAAGCCAGCAGAGCCAGTAGTTCTGCACATGGAAAAGGACTGGTGTATAGAAATTGGCATCTCAGTGGCCTGTTGATTCTCCGTCTGCCTGTCAAAGATGCCTCCATCAATAAAGAAGCTTTGTCTTTTGCTCTGCGGATACTGTATGACCCTGAGGAACGCCCCGATGAGTGGGGAGAGGCCGTACTCTCCGCTGCTGCGTTACTGGGAATGTCAAACCTCTTCCAGAAGTGTCTTAAAAAGATGATGGCAGATATCTCATCTTCAAATGTGTGCAGCTTTCATCAAGCATCCTGCAagTTCAAAGAGACTTTTCTCCAGAGAGCATGTGAACGCTGGCTGGAGCTGTTCTTTGTGACCGAACTCAGTTCTCACATAAAACTTAAAGATTTACCGTTTGACCTGCTGTTGAAAACCCTCCGTAGTCCAAGACTGTTTGCACCTAATGAGTATGAGGTCTTGCGAGTGGTGTTGTACTGGCTGTACCTGCAGTTAAACCCCCTCAGACAGACTCCTCCTGCCCATAGCACCGTCATCACCTTCTTCTCCAGGGAAACGACTGTTTTCTTGGAACTGCCTCAGGGCCAGAAATACATCACTGCCTTTCAAGCTCTTCGTATGCATGGCATTACTGAATGGCAGCATCTGCAGGAGCTGAAGAACATCAGAGTGCTTCCTGAATCCTGGCTGCTGAACATCCTGTCCAATCATTATCACACTCTTTATAGTGGGGGTGACATGATTGTGACTGACTTCTCCAAACAAGCCATGCGGTTTGGAATGATGTTGAATCAGGAACAGGAATGCTGCACTCAGACCATCAACCTGTATGGCTTTTACTTTATTCTTCAAGCTGCCAAAATGGGTCAATCCAATACATACATTTTCTCCATTGAGAGGTTAAGACACTGGGATCCTGCTGTACCCCAGTCTTCCGCTGTGAGCCATCCGTACTGCATGAGGGCTGATCGATCAGTGCGCTTTCACATCACAGTGCAAAGCTATGCCAACGGAGAGTGGCAAGAGCACAGCAGTGGAACTGTCAATCAACACTTCGGCTTATGCAAGCGCCTCAGCAGGAGCAAGccATTCCAGATTGAAGGACTTTCTCCACCCATTCTGGTGACCTTTGCTTTAGCTTTTCCATGTTGTTGATGCATTTCCCTGCGCCTGTTGGAAGAAACATAAAAGTAATATCAAACAGTTTCAttacaaatatattaatgtattacTTCA
>TCONS_00011104
CAGCAACAAGACCTATAAACAATCAGACAAGGAACATAAACACTCCGGCTAAGTTTTCTTCATTCTTCATGCACCTGTTCGGGCACCTCTTGATTTATTTAATGGTATTTAGTGTTTGTTCAAGATGTAGAAAGGAATAACACAATTCTCtttacatttagtctttaaatttctttattgttttggAATATAATGTGAAGTTCCAGTTTACATCTGCGCCATTTAAAAGACAATGCACATCCAGTGGAGTCCTTCAACCGGCAAAAATATGACATTCAGACCAAACACAAGGTCAGTGATGATAACAACCCAACCAAACACCACACGAAATGTGTCAGCTCGCTCACTATGTCAGCGCACACAAGCTGGGCACACCAACCGCTGGCAGCTGGCAGGTGCTTTAGGCAGTGACCTGTTGGGGCAAGCACAGATTCAGAGGGCAGAGGAGTTTGCCAATAAATCACCAGAAAGGAAAATTAAATCAGGTGAGATGTGCAATCAGTTTAATAAAGCAGACAGCACAGT

Function

symbol description
btbd16 Orthologous to human BTBD16 (BTB domain containing 16).

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-100513-3 Orthologous to human BTBD16 (BTB domain containing 16).

Ensembl:

ensembl_id ENSDARG00000027710

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010058 False 2047 mRNA 0.46 17 11601559 11649690
TCONS_00011104 True 525 lncRNA 0.41 3 11647192 11649690

Neighbor

gene id symbol gene type direction distance location
XLOC_005219 plekha1b coding downstream 8123 11496740 ~ 11593436 (-)
XLOC_005218 htra1b coding downstream 143934 11388724 ~ 11457625 (-)
XLOC_005217 zgc:174164 coding downstream 251660 11315849 ~ 11349899 (-)
XLOC_005216 get4 coding downstream 294793 11262954 ~ 11306766 (-)
XLOC_005215 si:ch73-30l9.1 coding downstream 343155 11244914 ~ 11258404 (-)
XLOC_005221 atoh1c coding upstream 118424 11768114 ~ 11768889 (-)
XLOC_005222 BX572641.1 coding upstream 685526 12335216 ~ 12335331 (-)
XLOC_005223 ccser2b coding upstream 1305248 12954938 ~ 13081229 (-)
XLOC_005224 NA coding upstream 1453176 13102866 ~ 13106223 (-)
XLOC_005225 cxl34c coding upstream 1503494 13153184 ~ 13155653 (-)
XLOC_005214 NA non-coding downstream 828613 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 1471657 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 1537891 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 1930422 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 1953214 9648228 ~ 9648345 (-)
XLOC_005237 NA non-coding upstream 2488596 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 3190097 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 3468197 15117887 ~ 15120113 (-)

Expression


Co-expression Network