XLOC_005200


Basic Information

Item Value
gene id XLOC_005200
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10124660 ~ 10129902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011103
ttcacggtctcctctccaccaatcagctggtgtgtggtgtgcggtcttgcgcaaaatggctgccgtcgtgtcatcctggtggatgctgcacactcaaggtggatgaggagattcccccctttgtgtaaagtgctttgagtgtctagaaaagcgctatataaatacaaggaattattattactattattataaaacacacacaatgcaGGTTCAGAGATTTTTTATTACATAGATGACATTGCCATAAGCATATGGCTCATGGTCAGGATAGCAGCAACTTTCACCtagtcatatatttatatatgtacacacagttACAAACAAAGTGAGACTGCACAAGACATCTTAGACTGTAAACatctaatacataaaaaaaagaataataacaataataataataaaaaacaattaattcattctttttggAGATCTATGCCACGCTTTGTTCTCATTGTGTCCAATAAAttagtattgaaaaaaaaaatgtagtatgATCATTTGCTATAGAACTAGTGACATAATATAGTACAACTGTACCACACTTTGGCTATCGAActacagaaagaaaaaagaaaatactggATCATGATTCTCTGTAATTTCCTGATGGGTAACTGTTcacacattacatttattttcttgatTCTTTGATATTAATCTTCAACAATTTCATTTCCAAAATCCCCCCAGAATGAGAGATTAAATATAAGAATGCATTATTcagaaaggaaaataaaaaaatcctgcaCCTTAGTCATGGGAGTGCTCAACTGGCCCAGCGTCTACGATATGATGAAGAGTTTTAACTCCCTCCCTGAGCATCGTGAGCATCATGCAAGTTCCTCTATCCTAGAAGTGTCATTATTTTCAGAAACCAGCCATCAAAGCTGCATGAGTAAGATATGAGAGATTGTGCAAACATTTCTGAAGATGATTAAAAAGAAACTAATGTAAACTGAATTACAGAAGAGTTAGTCCACGTCTCCACAGATCAGCATAATTCTGTTCTCATAACCCTGTGATAAAGTAAACCATGTGGCACTGTGGGTAGTGAGTGATGTCTGCTACCCAAAGTGTTACTGAGAGAATGTCTCGTCTCTTAGCAACACGCAGGAACTGTCCTGGTTCTCCACATGTTGCTTAGGACCCAGCAAAGCTTCAATACAACAAAAATTCATCAGGCAGTTCATTACGTCTTCTACTTTTGTCAATAACTAAACAGCAGTTAAAGggacactccacttttttttttggaaatgaggTAGTTTTACCACACCCCTAAAGTTAAACGgttgtgtttaaatatttttgaagcCACTCAGACAATttctgggtctggcaggagcactttagcttagcttagcataaaatactgaatcagattagaccgttagcatctcactcaaaaaaagttttgataagTTACCTATTTAAAGCTCGAGTCTTCGGTAGATCGTCTGAATGgataatagcaaaaatagcaaaactcagctgtttaactctgGGTGACTTagaaaatgagcctatttccaaaaaaaaaaagtgttcctttaaaagaattcttcacccaaaaatgaaaattctgtcatttactcacatttCATTTGTTACAAAccgatttaattttgtttttattacacccctagagttaaacagttgagttttaccatttctgAAGTCATTTAGACAATCTCTGGGTCTgccgggagcacttttagcttagcttagcataaaacaTTATATCGACCGTCAGCATTTCACTCAAAAAAGTTTCACCTATTTAAAGCTCGAGTCTTCTGCAGTTAAATCACCTACTAAGACTGATGGTCAAGGAAAGTTGCTGTTTTCTAAGCAGATATAGCTTAGGACTATATTCTCATTCCAGCGTAagaatcaaggaactttgctgctgtaccatgatgtaactacaaacAAGTCAAGCTttgaataggaaaattatcaaagctTCTTTTCTGAAATTTAAGCGAggtgctaatagtctaatctgacTCAATCATCTATGCTTAagataagctaaaagtgctctcgccAGACCTGTAGATCGTctgaatgaatttaaaacaatGGGGAAATGCAACCATTTTACTCTAGTTGACttataaaatgagcctatttccaaaaaagtgttcctttaaaggaattcttcaccccaaaatgaaaattgtgtcattTACTCACATTTCATTTGTTACAAACctatttgtttttgttgaaatATATTATTATGAAGAATGCAGGTCGCCGACACTTCAACTCCACAGTAAATTTGATCCTGCTATCGAAGTCAATGAGTGCCATGGGTACCAgcagttttcaaaatatcttatttttcattcaacataagaaagaaacttaGGTTTAAAACCAGATGAGAGAGAATAAACAATGTGGTAATTttcattgttgggtgaactatccctttaacacaacAGTAATCGCTAAGAATAGGGTTGCACAATACTGGAGGAATAAATTGCATTGCGATATTTTTAGTTTCAGAGTAAAGGCACGATGTAGTCACTTATTTTCATGCAGGTCACAGATAACGCAATTTACCCAAGCCAATCCGAGAATCAGAaccactgtgtatatatatatatatacagaaataaCGCAGTTCACTGTGAAAACAATGCACATACACTGATGAGTCAAAATATCAGGAACACATGCCTAATAAATGTGTGGTTCTCGCTGTGCTGGTAAAACGGCACCAACCCAATGCAATACGGACTCCACAAGATCCCCCTGTTGTGAAGCCACCATAGATTGAATATTGAATATGTTAATCAACTCAACTGGAGATAGATCTGGGGAAACTGGAGTTCAATAAACATCTTGAACTTTCCAGCAAGTTCTTCAGATCATTCCTAGACAACATGTGCAGATTGGCAGCGGGCATTATCGTGCCGAAAGAGGCAATTTCCACCAGGAACATTAGTATTATGATGGGGTCGAAGAAATTTTAAAGAAAAGAGGGTTTCCAGACAGCTTGTTGTGTTCTTCAAGGGGTCCACACTCACATGCCTATTGTAGGTTCTTGTAACGTTGGACAGGAACTCAGACTATACAGCCCCATATGCTGTAAAGTATGATGCGCAAATATTAAAATACTGTGTGATTTGTGTCACCGTACACATACAGTTGGTTTGGACTAGGTGGAATTCCCATAATTGCATTTGTATATCAGAGAGTTTTGGGTGTCGTCAGTTTTTGGTTGGTCCCTCCTTGGAACCCTAATGGTGAATTGCTAACCACAAACCGTGTAGAGTAACTTAGAGTTACTCACACTCATTTCCCAAGCACTTTGAGATGCGTTTAGCTTCATAAGTACAAAGATTGAATTGTATCCGTGGTTTGTCCAGATGGATCCAGTGCCTTAGAAgccttaaaatacttttttttttaatctaaaaacaACATCTCTGCGTCTTCGTGTTTAGCCAATCTGTAATTTTTCTGAAATGACGTCATCTGGGCCTTAGTCACTTATTGCTACAAAGCTTAACAGCATCAGCAAAAATGCTGAACTGAACTGTAATGTTTACACACATGATCCATCTTCCCAGGCACATACTGGTCTGGCATGTATACTACATCGGTAGGAGTTGGTTTTAGCAGTTcttgagatgatgatgatgatgatagggAAAGCTCTGGCTTTGTGTCTATAGTCTCTGTTGCCATGCAATAACAACTTTCTCTTTAGATGCTCAGATTGTTTTTATCCTGCCTATATATTCTGCAACCTATACTTCAATTACTAAATTATTTACTTGCGTAGACTTGGAGATGGTCTACGATATTCTCTAAACCTATGATGACCTATCATTAAGTTTTGTCTCATCAGTGTATGTGTAATTATATGAACACTCACTGTTTTTTGGaaacaggctcattttacaatTCACCAAGTGTTAAACAgttgttttactatttttgaatccatttagccgATCTCCAGATGTGtctgagcacttttagcttagcttagcataggtcattaaatcggattagaccattagcattttgctcaAATTACCTTATAACTAAAttccctatttaaagcttgacttctctgtagttacattgtgtaccaagattgaaggaaaatgaaagttGCTAGTTCTAGgtcaatatggctaggaactatactccaGGGTAatgatcaaggaactttgctgacTAATTTTAGCAGCAGCTGGTGTAATAGTACAATGCATTGGTTGAAAATAGTTCCCATTATTACGCTAAAAATAAGACTATAGTTCCTAGTCATATCAAGCTAGAAAAGAGcatttcattttctgtcagtcttagtacacaatgtaactacagaagggaCTAGCAATAATTCCAGAGGAGTTAAACTAAGTAAAGTAAGGCTATTTCCAaataaagtggagtgttcctttacaGTGTAGCATGCACAGTTGAGAACTGCACTAAGCCACATGGCTATTTTGATCTCATTTcaatatactgtgcagccctagctTACAACATGTTTATACCAACACGTAAAGCTTCAAAATTGACCTTGAACATCTGAAATGCACCAAAAGGGGGCCGTTCACACAGTACACACTGCAATTACATTGCTAGTTTAAGTAAACATGCACTAGGTGGATGTGTTTGAGCGTTGCGCCGTTTGCATTGTCACATGCTTGACATAGCATTTTAAATCTGTGATGCTCAAGGTAAAGTGCTTactcaaaaaacttttttttcacccTTACACCACCTGCTTTTCAACTCACAAACACGTTCTATTGTGAATGGCCCCTGAAAGCCCCGATAAACTTCAAGCAAATATCCAATAACGAAGAGGTATTATGTAATCTCAAAGAAAATCAGGCCAAAATTAATGGCAAAGAACACTTTCCAGAAAAGTTTGTTCCCGCTGGTTAACACCTTCGAACTACCACTGACCCGTGGTGATTAGAGGTGTGTTCTGAGACTCTGCTTTCTTTGACGTGGAAATCTTCTCCGGTTCATCTCTTCGGTTCAGTCTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011103 True 5037 lncRNA 0.37 2 10124660 10129902

Neighbor

gene id symbol gene type direction distance location
XLOC_005199 BX928755.1 coding downstream 60992 10060636 ~ 10063668 (-)
XLOC_005198 ngfrb coding downstream 85790 9949941 ~ 10038870 (-)
XLOC_005197 prdm9 coding downstream 328423 9781524 ~ 9796237 (-)
XLOC_005194 heatr1 coding downstream 424055 9619909 ~ 9700605 (-)
XLOC_005201 mpp2b coding upstream 69317 10199219 ~ 10300101 (-)
XLOC_005202 pyyb coding upstream 174533 10304435 ~ 10315039 (-)
XLOC_005203 tut1 coding upstream 207772 10337674 ~ 10352001 (-)
XLOC_005204 ndc80 coding upstream 223431 10353333 ~ 10365969 (-)
XLOC_005205 mki67 coding upstream 236715 10366617 ~ 10381282 (-)
XLOC_005196 AL732629.2 non-coding downstream 453523 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 476315 9648228 ~ 9648345 (-)
XLOC_005187 CR457459.1 non-coding downstream 779175 9345364 ~ 9345485 (-)
XLOC_005185 NA non-coding downstream 886866 9227386 ~ 9237794 (-)
XLOC_005214 NA non-coding upstream 639229 10769131 ~ 10772946 (-)
XLOC_005222 BX572641.1 non-coding upstream 2205314 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 2972964 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 4008384 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 4709885 14839787 ~ 14840559 (-)

Expression


Co-expression Network