XLOC_005203 (tut1)


Basic Information

Item Value
gene id XLOC_005203
gene name tut1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10337674 ~ 10352001 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010032
GACGCAACGGAACATCATGGAGGGAGATTTGACTTGTGTTTTGTAGCTCAGACTCTTTCCTTCAAAGTAGCAGCACAGTCTCTCAATGGAGCTCGACAAAGACATCCAGACAACTCAAAAGGGATTTCATTGCAACCTCTGCCATGTTAACATACCTAACAGGCCCAGTTTGGAAGATCATGTTAAAGGAAAGAAACACCTGCATCTCCTGCGCCTCAGAGCTCAGCGGAAAACTCAGGAAGAAAACAGTGTGTTTGTGAGCGGCTTTAAAGCAGACACGTCTCAGACTGAGCTGAAGGAGTATTTCCAACAGTTTGGACTGGTGACGGATGTGATCATGGACAAACAGAAGGGTGTGTATGCCATAGTTGAGTTTTCAGAGTCTCAGGATGTTCAGACAACTCTGGCACAACCACAGCATCAGCTAAATGGACTCAAACTCCGTGTCAAACCCAGAGAGAAGAAAGAGTTCAAGCTGGCCAGCAGAGGGAAACAAGACTGCAAAAACACCCTGATCAGCCTGGACAAACTCAACTTTGAGCTCTGCAAGGCTATGTCTgtaaatgagCAGATACAGAAAGTAGTCGAGAGTTTGGAGCTGAAAGACAACGAGAAGAAAGTGAGAGATCTTCTAGTTCAGCTGCTGCAGGAAGTTTTCACAGAGTTCTTTCCAgATTGCCAGATTGTGCCCTTTGGCTCGTCTGTGAACACCTTTGGGCTTCACTCCTGTGATCTTGATCTGTTCCTTGACCTTGAGAACACCAAAGTATTTCAAGCTCGTGCAAAGTCTTCAGAACAGACAGGAGAGAACCAGTCCGAGGATTGCCGTTCTGAAGACTCCATTTTGTCTGACATTGACCTGTCCACTGCCTCTCCTGCTGAAATTTTGGAGCTGGTTGCTGTTATTTTGAGGAAGTGCGTTCCTGGTGTTCACAAAGTACAGGCGCTCAGCACTGCTCGACTTCCTGTGGTCAAGTTCAGTCACAAGGAGCTCAACCTCCAAGGAGACATCACCATCAACAACAGATTGGCAGTAAGGAACACAAAATTTCTGCAGTTGTGTTCAGGTATCGACTCCAGACTCCGACCCTTAGTCTACACCATCCGTTTATGGGCTAAGCAGAAACAACTAGCAGGAAACCTGTCTGGCCCGGGTCCGTTGTTGAACAATTACGCTCTCACACTGCTGGTGATCTTCTTCCTTCAGAATCGAGACCCTCCTGTGCTTCCTTCTGTCAATCAGCTCAAGAACATGGCCTgTGAGGAAGAGGAGTGTGCTATTGAGGAATGGGATTGCACATTTCCTAGCCAGCCCTTTAGTGTACCGCCCAGCAAAAACACTGAAGATCTCTGCACTTTGCTTTTTGGATTCTTCACCTTTTACTCCAAGTTTGATTTCCCTGCGTCAGTGGTGTCTCTGAGAGATGGCCATGCGCTGCCTATCACAGACTTCCTCAAAAGTGACATGGAGGCGTTAAAAACTGCAGATGCCTCTAGTCCCAAACCAAAGCGTTCTTCAGCTCCAAGACTGGGCCCTATGAATGTCCTTGATCCATTTGAGCTGAACCACAATGTGGCAGGAAACCTTAATGAGCGAACGCAGAAGAACTTCAAGAGGGAGTGCTGCGAGGCTGAGAAGTACTGTCGCAGTCTGCAGTACCAGCGCAAATCAGCCAAGGGCAAATCCTGGGGCCTCGTGCGACTCTTTGCACCGCAGAGTGAAGCTGCAGCCTCTTCACAGCCCAGAGCTGAGAAGGTTTTGGAGGTCAGCGTCCCTTTCAAGCCAGCCAGTCTCCCAGAATCCTTGCGTGCCCAGCTGGCTTCGGCTGGGAAGGATTTTCGGGGGCTCTGGTTTGCCGAGGTCTGCTCTGCTGTGCATAAGGTGTTTAATAAAATCTTACAGTGTTCACCCACAGAGGAGACTCAAAGTTTGGACAAAACCGATAAAAGTGGAAGTGAAATGGAGGTAAATAATAACAGGAGTCTAGAAGATACTAACATCCAAGTGAAAGGTGAGGCTGGTAAAAAGAGGCCTCTTTCAGTGGAGGAGGGTCCATCAACCTCCACCATTACACAAGCGAAAAGACAAAGACTAGATGTTGACCTGGAGCACCCAGAGCCACTCCACTGGACTTGGACTCAGAGGAGCCGTGTTTGGGCAGGCCGGCGGAAAGTGCGAAGAGATCTCTTGAAGACCAGCGATGAGGCATCCAAACCTGAAGGAGGCTGTGTGGATATGGAGAGCAGGGTGACGCAGAGCATTGTGGAGAAAGAGGAGAAACTTCACGATTCGTTGGAGTTCAAAGTGGACGCTGAGGTCGTTGGAGGGAATGAAAGCACTAAGGTTGTCCTCCGTTTCCACCCGAGCAATGATACTGCAGGCGTCTTTCAAGATTTCTTCCATTTTCTGGAGTCCTTCCTGCCTAAGATGGCAGAGACGATCATGGGCAGGGCAGAGGACATTACAGATATGTcgtaatttagttttttgtttgttcaaaacttaatttgattaaaatctttataaacttgTGATTTTTTATGTAAAGCTTAAAGATTGACTTTGTAAACCTTCTAAAAAAGATGTTCTGAGAATATGAGAATATGAGAACATACATGcttttgtttttgcatgttttgaCTTCAGATTTGTTTCCTGTTTGAATTAGTTGACTTTTGTTTTATTCCTGATGATTTTGGCATGATTGCCTCTATAATGTGTATATAATTAATGTGAACACTCACATTAAAACTGACGGTTTGTATGATTGAGA

Function

symbol description
tut1 Predicted to enable RNA adenylyltransferase activity; RNA uridylyltransferase activity; and mRNA 3'-UTR binding activity. Predicted to be involved in mRNA polyadenylation; pre-mRNA cleavage required for polyadenylation; and snRNA processing. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleolus. Predicted to be active in nuclear speck. Is expressed in head; ovary; and testis. Orthologous to human TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific).

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006397 mRNA processing biological_process
GO:0016180 snRNA processing biological_process
GO:0098789 pre-mRNA cleavage required for polyadenylation biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function
GO:0050265 RNA uridylyltransferase activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-050706-68 Predicted to enable RNA adenylyltransferase activity; RNA uridylyltransferase activity; and mRNA 3'-UTR binding activity. Predicted to be involved in mRNA polyadenylation; pre-mRNA cleavage required for polyadenylation; and snRNA processing. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleolus. Predicted to be active in nuclear speck. Is expressed in head; ovary; and testis. Orthologous to human TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific).

Ensembl:

ensembl_id ENSDARG00000057321

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010032 True 2774 mRNA 0.46 10 10337674 10352001

Neighbor

gene id symbol gene type direction distance location
XLOC_005202 pyyb coding downstream 22635 10304435 ~ 10315039 (-)
XLOC_005201 mpp2b coding downstream 37573 10199219 ~ 10300101 (-)
XLOC_005200 NA coding downstream 207772 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 coding downstream 274006 10060636 ~ 10063668 (-)
XLOC_005198 ngfrb coding downstream 298804 9949941 ~ 10038870 (-)
XLOC_005204 ndc80 coding upstream 1332 10353333 ~ 10365969 (-)
XLOC_005205 mki67 coding upstream 14616 10366617 ~ 10381282 (-)
XLOC_005206 eef2k coding upstream 29956 10381957 ~ 10409970 (-)
XLOC_005207 mosmob coding upstream 60008 10412009 ~ 10421955 (-)
XLOC_005208 uqcrc2b coding upstream 72675 10424676 ~ 10441661 (-)
XLOC_005196 AL732629.2 non-coding downstream 666537 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 689329 9648228 ~ 9648345 (-)
XLOC_005187 CR457459.1 non-coding downstream 992189 9345364 ~ 9345485 (-)
XLOC_005214 NA non-coding upstream 417130 10769131 ~ 10772946 (-)
XLOC_005222 BX572641.1 non-coding upstream 1983215 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 2750865 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 3786285 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 4487786 14839787 ~ 14840559 (-)

Expression


Co-expression Network